Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

SRY-box 5

Gene

SOX5

Organism
Nomascus leucogenys (Northern white-cheeked gibbon) (Hylobates leucogenys)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi435 – 503HMG boxPROSITE-ProRule annotationAdd BLAST69

GO - Molecular functioni

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
SRY-box 5Imported
Gene namesi
Name:SOX5Imported
OrganismiNomascus leucogenys (Northern white-cheeked gibbon) (Hylobates leucogenys)Imported
Taxonomic identifieri61853 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHylobatidaeNomascus
Proteomesi
  • UP000001073 Componenti: Chromosome 23

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotation

Structurei

3D structure databases

SMRiA0A2I3GVY7
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini435 – 503HMG boxInterPro annotationAdd BLAST69

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili182 – 202Sequence analysisAdd BLAST21
Coiled coili204 – 255Sequence analysisAdd BLAST52
Coiled coili373 – 393Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

GeneTreeiENSGT00760000119274

Family and domain databases

Gene3Di1.10.30.10, 1 hit
InterProiView protein in InterPro
IPR009071 HMG_box_dom
IPR036910 HMG_box_dom_sf
PfamiView protein in Pfam
PF00505 HMG_box, 1 hit
SMARTiView protein in SMART
SM00398 HMG, 1 hit
SUPFAMiSSF47095 SSF47095, 1 hit
PROSITEiView protein in PROSITE
PS50118 HMG_BOX_2, 1 hit

Sequencei

Sequence statusi: Complete.

A0A2I3GVY7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSKRPASPY GEADGEVAMV TSRQKVEEEE SDGLPAFHLP LHVSFPNKPH
60 70 80 90 100
SEEFQPVSLL TQETCGHRTP TSQHNTMEVD GNKVMSSFAP HNSSTSPQKA
110 120 130 140 150
EEGGRQSGES LSSTALGTPE RRKGSLADVV DTLKQRKMEE LIKNEPEETP
160 170 180 190 200
SIEKLLSKDW KDKLLAMGSG NFGEIKGTPE SLAEKERQLM GMINQLTSLR
210 220 230 240 250
EQLLAAHDEQ KKLAASQIEK QRQQMELAKQ QQEQIARQQQ QLLQQQHKIN
260 270 280 290 300
LLQQQIQVQG QLPPLMIPVF PPDQRTLAAA AQQGFLLPPG FSYKAGCSDP
310 320 330 340 350
YPVQLIPTTM AAAAAATPGL GPLQLQQLYA AQLAAMQVSP GGKLPGIPQG
360 370 380 390 400
NLGAAVSPTS IHTDKSTNSP PPKSKEKTTL ESLTQQLAVK QNEEGKFSHA
410 420 430 440 450
MMDFNLSGDS DGSAGVSESR IYRESRGRGS NEPHIKRPMN AFMVWAKDER
460 470 480 490 500
RKILQAFPDM HNSNISKILG SRWKAMTNLE KQPYYEEQAR LSKQHLEKYP
510 520 530 540 550
DYKYKPRPKR TCLVDGKKLR IGEYKAIMRN RRQEMRQYFN VGQQAQIPIA
560 570 580 590 600
TAGVVYPGAI AMAGMPSPHL PSEHSSVSSS PEPGMPVIQS TYGVKGEEPH
610 620 630 640
IKEEIQAEDI NGEIYDEYDE EEDDPDVDYG SDSENHIAGQ AN
Length:642
Mass (Da):71,044
Last modified:February 28, 2018 - v1
Checksum:i1F142CAF87059BAA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ADFV01029324 Genomic DNA No translation available.
ADFV01029325 Genomic DNA No translation available.
ADFV01029326 Genomic DNA No translation available.
ADFV01029327 Genomic DNA No translation available.
ADFV01029328 Genomic DNA No translation available.
ADFV01029329 Genomic DNA No translation available.
ADFV01029330 Genomic DNA No translation available.
ADFV01029331 Genomic DNA No translation available.
RefSeqiXP_012357942.1, XM_012502488.1

Genome annotation databases

EnsembliENSNLET00000045380; ENSNLEP00000035466; ENSNLEG00000005036
GeneIDi100590071

Similar proteinsi

Entry informationi

Entry nameiA0A2I3GVY7_NOMLE
AccessioniPrimary (citable) accession number: A0A2I3GVY7
Entry historyiIntegrated into UniProtKB/TrEMBL: February 28, 2018
Last sequence update: February 28, 2018
Last modified: April 25, 2018
This is version 3 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health