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Protein
Submitted name:

Sorting nexin-1

Gene

SNX1

Organism
Castor canadensis (Beaver)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Sorting nexin-1Imported
Gene namesi
Name:SNX1Imported
OrganismiCastor canadensis (Beaver)Imported
Taxonomic identifieri51338 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaCastorimorphaCastoridaeCastor

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini143 – 272PXInterPro annotationAdd BLAST130

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili363 – 383Sequence analysisAdd BLAST21
Coiled coili446 – 466Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Family and domain databases

CDDicd07281. PX_SNX1. 1 hit.
Gene3Di1.20.1270.60. 2 hits.
3.30.1520.10. 1 hit.
InterProiView protein in InterPro
IPR027267. AH/BAR_dom_sf.
IPR001683. Phox.
IPR036871. PX_dom_sf.
IPR034901. PX_SNX1.
IPR028660. SNX1.
IPR005329. Sorting_nexin_N.
IPR015404. Vps5_C.
PANTHERiPTHR10555:SF129. PTHR10555:SF129. 1 hit.
PfamiView protein in Pfam
PF00787. PX. 1 hit.
PF03700. Sorting_nexin. 1 hit.
PF09325. Vps5. 1 hit.
SMARTiView protein in SMART
SM00312. PX. 1 hit.
SUPFAMiSSF103657. SSF103657. 1 hit.
SSF64268. SSF64268. 1 hit.
PROSITEiView protein in PROSITE
PS50195. PX. 1 hit.

Sequencei

Sequence statusi: Complete.

A0A250Y2C4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASGGGGCSA SGRLPPPFPG LDPESEGAAG GSEPEAGDSD TEGEDIFTGA
60 70 80 90 100
AAANKPQSPK RTASLLPINS SSKENGIHEE QDQEPQDLFA DATVELSLDS
110 120 130 140 150
TQNNQKKVPA KMLVPVPPQE ATSSSKSQLS YEELEEEEQE DQFDLTVGIT
160 170 180 190 200
DPEKIGDGMN AYVAYKVTTQ TSLPMFRSKQ FAVKRRFSDF LGLYEKLSEK
210 220 230 240 250
HSQNGFIVPP PPEKSLIGMT KVKVGKEDSS SAEFLEKRRA ALERYLQRVV
260 270 280 290 300
NHPTMLQDPD VREFLEKEEL PRAVGTQTLS GAGLLKMFNK ATDAVSKMTI
310 320 330 340 350
KMNESDIWFE EKLQEVECEE QRLRKLHAVV ETLVNHRKEL AVNTAQFAKS
360 370 380 390 400
LAMLGSSEDN TALSRALSQL AEVEEKIEQL HQEQANSDFF LLAELLNDYI
410 420 430 440 450
RLLAIVRAAF DQRMKTWQRW QDAQATLQKK REAEARLLWA NKPDKLQQAK
460 470 480 490 500
DEITEWESRV TQYERDFERI STVVRKEVIR FEKEKSKDFK NHVIKYLETL
510 520
LCSQQQLAKY WEAFLPEAKA IS
Length:522
Mass (Da):58,809
Last modified:November 22, 2017 - v1
Checksum:i1973C7718C3EFC62
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GFFV01002194 Transcribed RNA. Translation: JAV37751.1.
RefSeqiXP_020029668.1. XM_020174079.1.

Genome annotation databases

GeneIDi109693045.

Similar proteinsi

Entry informationi

Entry nameiA0A250Y2C4_CASCN
AccessioniPrimary (citable) accession number: A0A250Y2C4
Entry historyiIntegrated into UniProtKB/TrEMBL: November 22, 2017
Last sequence update: November 22, 2017
Last modified: January 31, 2018
This is version 3 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)