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Protein

Capsid protein VP1

Gene

VP1

Organism
Sorex coronatus polyomavirus 1
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Forms an icosahedral capsid with a T=7 symmetry.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processHost-virus interaction, Viral attachment to host cellUniRule annotation, Virus entry into host cell

Names & Taxonomyi

Protein namesi
Recommended name:
Capsid protein VP1UniRule annotation
Gene namesi
Name:VP1Imported
OrganismiSorex coronatus polyomavirus 1Imported
Taxonomic identifieri2026838 [NCBI]
Taxonomic lineageiVirusesdsDNA viruses, no RNA stagePolyomaviridaeunclassified Polyomaviridae

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Capsid protein, Host nucleusUniRule annotation, T=7 icosahedral capsid proteinUniRule annotation, Virion

Expressioni

Keywords - Developmental stagei

Late proteinUniRule annotation

Interactioni

Subunit structurei

Homomultimer.UniRule annotation

Family & Domainsi

Sequence similaritiesi

Belongs to the polyomaviruses coat protein VP1 family.UniRule annotation

Family and domain databases

Gene3Di2.60.175.10, 1 hit
InterProiView protein in InterPro
IPR000662 Capsid_VP1_Polyomavir
IPR011222 dsDNA_vir_gr_I_capsid
IPR036931 Polyomavir_VP1_sf
PfamiView protein in Pfam
PF00718 Polyoma_coat, 1 hit
PIRSFiPIRSF003376 Capsid_VP1_Polyomavir, 1 hit
SUPFAMiSSF88648 SSF88648, 1 hit

Sequencei

Sequence statusi: Complete.

A0A223PYL5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAPKRKTTCS SKKTCPQPSS VPKLIIKGGI EVLDVKTGDD SITQIEAYLN
60 70 80 90 100
PRMGVNDETN TWYGFSEQIT VATSRETDRP PKEQMPYYSC ARISLPMLND
110 120 130 140 150
DMTCSTLLMW EAVSVKTEVI GSNTLMAVHD YMTRTDNGVG HPVVGSTYHM
160 170 180 190 200
FAVGGEPLDL QGIQQSHLIQ YPDGIIAPKN VTTVSAKLQC LDPTAKAKLD
210 220 230 240 250
KDGKYPIEAW SPDPSKNENT RYFGNFYGGL TTPPVLTFTN TVTTILLDEN
260 270 280 290 300
GVGPLCKGDG LFLSCCDIMG WFQAGSGTHQ RFRGLPRYFN VQLRKRAVKN
310 320 330 340 350
PYPVSALLTS LFTNMMPRMT GQPMIGEKSQ VEEVRVYDGL EDLPGDPDMD
360
RHIDEFGQEV TPVP
Length:364
Mass (Da):40,261
Last modified:October 25, 2017 - v1
Checksum:i73CC0506EAA24988
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
MF375001 Genomic DNA Translation: ASU50431.1
MF401582 Genomic DNA Translation: ASU50436.1

Similar proteinsi

Entry informationi

Entry nameiA0A223PYL5_9POLY
AccessioniPrimary (citable) accession number: A0A223PYL5
Entry historyiIntegrated into UniProtKB/TrEMBL: October 25, 2017
Last sequence update: October 25, 2017
Last modified: December 20, 2017
This is version 3 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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