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Protein

4-hydroxy-tetrahydrodipicolinate reductase

Gene

dapB

Organism
Mycobacterium paratuberculosis
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.UniRule annotationSAAS annotation

Catalytic activityi

(S)-2,3,4,5-tetrahydropyridine-2,6-dicarboxylate + NAD(P)+ + H2O = (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + NAD(P)H.UniRule annotationSAAS annotation

Pathwayi: L-lysine biosynthesis via DAP pathway

This protein is involved in step 4 of the subpathway that synthesizes (S)-tetrahydrodipicolinate from L-aspartate.UniRule annotationSAAS annotation
Proteins known to be involved in the 4 steps of the subpathway in this organism are:
  1. Aspartokinase (ask)
  2. no protein annotated in this organism
  3. 4-hydroxy-tetrahydrodipicolinate synthase (dapA_3)
  4. 4-hydroxy-tetrahydrodipicolinate reductase (dapB)
This subpathway is part of the pathway L-lysine biosynthesis via DAP pathway, which is itself part of Amino-acid biosynthesis.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes (S)-tetrahydrodipicolinate from L-aspartate, the pathway L-lysine biosynthesis via DAP pathway and in Amino-acid biosynthesis.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei31NADUniRule annotation1
Active sitei132Proton donor/acceptorUniRule annotation1
Binding sitei133SubstrateUniRule annotation1
Active sitei136Proton donorUniRule annotation1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi7 – 12NAD(P)UniRule annotation6
Nucleotide bindingi75 – 77NAD(P)UniRule annotation3
Nucleotide bindingi102 – 105NAD(P)UniRule annotation4

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionOxidoreductaseUniRule annotationSAAS annotationImported
Biological processAmino-acid biosynthesis, Diaminopimelate biosynthesisUniRule annotationSAAS annotation, Lysine biosynthesisUniRule annotationSAAS annotation
LigandNADUniRule annotationSAAS annotation, NADPUniRule annotationSAAS annotation

Enzyme and pathway databases

UniPathwayiUPA00034; UER00018.

Names & Taxonomyi

Protein namesi
Recommended name:
4-hydroxy-tetrahydrodipicolinate reductaseUniRule annotationSAAS annotation (EC:1.17.1.8UniRule annotationSAAS annotation)
Short name:
HTPA reductaseUniRule annotation
Gene namesi
Name:dapBUniRule annotationImported
ORF Names:B0172_02836Imported, B0173_00544Imported
OrganismiMycobacterium paratuberculosisImported
Taxonomic identifieri1770 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaCorynebacterialesMycobacteriaceaeMycobacteriumMycobacterium avium complex (MAC)
Proteomesi
  • UP000196522 Componenti: Unassembled WGS sequence
  • UP000196305 Componenti: Unassembled WGS sequence

Subcellular locationi

  • Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Interactioni

Subunit structurei

Homotetramer.UniRule annotation

Structurei

3D structure databases

SMRiA0A202FZ82.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 105DapB_NInterPro annotationAdd BLAST105
Domaini108 – 235DapB_CInterPro annotationAdd BLAST128

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni142 – 143Substrate bindingUniRule annotation2

Sequence similaritiesi

Belongs to the DapB family.UniRule annotationSAAS annotation

Phylogenomic databases

KOiK00215.

Family and domain databases

HAMAPiMF_00102. DapB. 1 hit.
InterProiView protein in InterPro
IPR022663. DapB_C.
IPR000846. DapB_N.
IPR022664. DapB_N_CS.
IPR023940. DHDPR_bac.
IPR036291. NAD(P)-bd_dom_sf.
PANTHERiPTHR20836. PTHR20836. 1 hit.
PfamiView protein in Pfam
PF05173. DapB_C. 1 hit.
PF01113. DapB_N. 1 hit.
PIRSFiPIRSF000161. DHPR. 1 hit.
SUPFAMiSSF51735. SSF51735. 1 hit.
TIGRFAMsiTIGR00036. dapB. 1 hit.
PROSITEiView protein in PROSITE
PS01298. DAPB. 1 hit.

Sequencei

Sequence statusi: Complete.

A0A202FZ82-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRVGVLGAKG KVGSTMVAAV QAAEDLTLSA EVDAGDPLSL LTDGGTEAVI
60 70 80 90 100
DFTHPDVVMG NLEFLVRNGI HAVVGTTGFT AERLAQVREW LADSPGTSVL
110 120 130 140 150
VAPNFAIGAV LSMHFAKQAA RFFDSAEVIE LHHPHKADAP SGTATRTAKL
160 170 180 190 200
IAEARKGLPP NPDATSTSLP GARGADVDGI PVHAVRLAGL VAHQEILFGT
210 220 230 240
EGETLSIRHD SLDRTSFVPG VLLAVRRIRE HPGLTVGLEP LLDLG
Length:245
Mass (Da):25,561
Last modified:October 25, 2017 - v1
Checksum:i485C4013755E0FB0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
MWPB01000017 Genomic DNA. Translation: OUZ02792.1.
MWQD01000002 Genomic DNA. Translation: OVF05828.1.
RefSeqiWP_003875178.1. NZ_NKRI01000003.1.

Genome annotation databases

GeneIDi2720864.
KEGGimavi:RC58_04565.
mavu:RE97_04565.

Similar proteinsi

Entry informationi

Entry nameiA0A202FZ82_MYCPC
AccessioniPrimary (citable) accession number: A0A202FZ82
Entry historyiIntegrated into UniProtKB/TrEMBL: October 25, 2017
Last sequence update: October 25, 2017
Last modified: February 28, 2018
This is version 5 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

Lacks conserved residue(s) required for the propagation of feature annotation.UniRule annotation
The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported
Was originally thought to be a dihydrodipicolinate reductase (DHDPR), catalyzing the conversion of dihydrodipicolinate to tetrahydrodipicolinate. However, it was shown in E.coli that the substrate of the enzymatic reaction is not dihydrodipicolinate (DHDP) but in fact (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinic acid (HTPA), the product released by the DapA-catalyzed reaction.UniRule annotation

Keywords - Technical termi

Complete proteomeImported