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Protein

Gag polyprotein

Gene

gag

Organism
Human immunodeficiency virus 1
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRNA-bindingUniRule annotationSAAS annotation, Viral nucleoproteinUniRule annotation
Biological processHost-virus interaction, Viral budding, Viral budding via the host ESCRT complexesSAAS annotation, Viral release from host cell
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Gag polyproteinUniRule annotationSAAS annotation
Gene namesi
Name:gagImported
OrganismiHuman immunodeficiency virus 1Imported
Taxonomic identifieri11676 [NCBI]
Taxonomic lineageiVirusesRetro-transcribing virusesRetroviridaeOrthoretrovirinaeLentivirusPrimate lentivirus group
Virus hostiHomo sapiens (Human) [TaxID: 9606]

Subcellular locationi

  • Virion UniRule annotation
  • Host nucleus UniRule annotation
  • Host cytoplasm UniRule annotation
  • Host cytoplasm UniRule annotationSAAS annotation
  • Host nucleus UniRule annotationSAAS annotation
  • Virion UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

Capsid proteinUniRule annotationSAAS annotation, Host cytoplasmUniRule annotationSAAS annotation, Host nucleusUniRule annotationSAAS annotation, Virion

PTM / Processingi

Post-translational modificationi

Gag-Pol polyprotein: Specific enzymatic cleavages by the viral protease yield mature proteins.UniRule annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini403 – 418CCHC-typeInterPro annotationAdd BLAST16
Domaini425 – 440CCHC-typeInterPro annotationAdd BLAST16

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili94 – 121Sequence analysisAdd BLAST28

Sequence similaritiesi

Belongs to the primate lentivirus group gag polyprotein family.SAAS annotation

Keywords - Domaini

Coiled coilSequence analysis, RepeatSAAS annotation, Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Family and domain databases

Gene3Di1.10.1200.30. 1 hit.
1.10.150.90. 1 hit.
1.10.375.10. 1 hit.
InterProiView protein in InterPro
IPR000721. Gag_p24.
IPR014817. Gag_p6.
IPR000071. Lentvrl_matrix_N.
IPR012344. Matrix_HIV/RSV_N.
IPR008916. Retrov_capsid_C.
IPR008919. Retrov_capsid_N.
IPR010999. Retrovr_matrix.
IPR001878. Znf_CCHC.
IPR036875. Znf_CCHC_sf.
PfamiView protein in Pfam
PF00540. Gag_p17. 1 hit.
PF00607. Gag_p24. 1 hit.
PF08705. Gag_p6. 2 hits.
PF00098. zf-CCHC. 2 hits.
PRINTSiPR00234. HIV1MATRIX.
SMARTiView protein in SMART
SM00343. ZnF_C2HC. 2 hits.
SUPFAMiSSF47836. SSF47836. 1 hit.
SSF47943. SSF47943. 1 hit.
SSF57756. SSF57756. 1 hit.
PROSITEiView protein in PROSITE
PS50158. ZF_CCHC. 2 hits.

Sequencei

Sequence statusi: Complete.

A0A1X9QG37-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGARASILSG GKLDAWERIR LRPGGKKKYR LKHLVWASRE LERFAVNPGL
60 70 80 90 100
LETAEGCRQI LXQLQPSLQT GSEELKSLFN TVATLYCVHQ RIDVRDTKEA
110 120 130 140 150
LDKIEEEQNK SKQKAQQAAA AAGGSRQDSH AAAAGGSCQV SQNYPIVQNL
160 170 180 190 200
QGQMVHQAIS PRTLNAWVKV VEEKAFSPEV IPMFSALSEG ATPQDLNTML
210 220 230 240 250
NTVGGHQAAM QMLKETINEE AAEWDRIHPI HAGPIAPGQM REPRGSDIAG
260 270 280 290 300
TTSTLQEQIG WMTSNPPIPV GEIYKRWIIL GLNKIVRMYS PTSILDIRQG
310 320 330 340 350
PKEPFRDYVD RFYKTLRAEQ ASQDVKNWMT ETLLVQNANP DCKTILKALG
360 370 380 390 400
PAATLEEMMT ACQGVGGPGH KARVLAEAMS QVTNPNTIMM QRGNFRNQGK
410 420 430 440 450
IIKCFNCGKV GHIAKNCRAP RKKGCWKCGK EGHQMKDCNE RQANFLGKIW
460 470 480 490 500
PSHKGRPGNF LQSRPEPTAP PAESLRPTAP PAESFRFGEE TTTPSQKQEP
510 520
IDRELYPLAS LKSLFGNDPL SQ
Length:522
Mass (Da):57,786
Last modified:August 30, 2017 - v1
Checksum:i08347E8E9742386C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
KY989953 Genomic RNA. Translation: ARQ22211.1.

Keywords - Coding sequence diversityi

Ribosomal frameshiftingSAAS annotation

Similar proteinsi

Entry informationi

Entry nameiA0A1X9QG37_9HIV1
AccessioniPrimary (citable) accession number: A0A1X9QG37
Entry historyiIntegrated into UniProtKB/TrEMBL: August 30, 2017
Last sequence update: August 30, 2017
Last modified: March 28, 2018
This is version 8 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)