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Protein

ATP-dependent RNA helicase RhlB

Gene

rhlB

Organism
Cedecea sp. NFIX57
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

DEAD-box RNA helicase involved in RNA degradation. Has RNA-dependent ATPase activity and unwinds double-stranded RNA.UniRule annotationSAAS annotation

Catalytic activityi

ATP + H2O = ADP + phosphate.UniRule annotationSAAS annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionHelicaseUniRule annotationSAAS annotationImported, Hydrolase, RNA-bindingUniRule annotationSAAS annotation
LigandATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
ATP-dependent RNA helicase RhlBUniRule annotationSAAS annotation (EC:3.6.4.13UniRule annotationSAAS annotation)
Gene namesi
Name:rhlBUniRule annotation
ORF Names:SAMN03159353_102556Imported
OrganismiCedecea sp. NFIX57Imported
Taxonomic identifieri1566286 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeCedecea
Proteomesi
  • UP000193679 Componenti: Unassembled WGS sequence

Subcellular locationi

  • Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Interactioni

Subunit structurei

Component of the RNA degradosome, which is a multiprotein complex involved in RNA processing and mRNA degradation.UniRule annotationSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini9 – 37Q_MOTIFInterPro annotationAdd BLAST29
Domaini40 – 219Helicase ATP-bindingInterPro annotationAdd BLAST180
Domaini245 – 390Helicase C-terminalInterPro annotationAdd BLAST146

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi9 – 37Q motifPROSITE-ProRule annotationAdd BLAST29

Sequence similaritiesi

Belongs to the DEAD box helicase family. RhlB subfamily.UniRule annotationSAAS annotation

Family and domain databases

CDDicd00079. HELICc. 1 hit.
HAMAPiMF_00661. DEAD_helicase_RhlB. 1 hit.
InterProiView protein in InterPro
IPR011545. DEAD/DEAH_box_helicase_dom.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR000629. RNA-helicase_DEAD-box_CS.
IPR023554. RNA_helicase_ATP-dep_RhlB.
IPR014014. RNA_helicase_DEAD_Q_motif.
PfamiView protein in Pfam
PF00270. DEAD. 1 hit.
PF00271. Helicase_C. 1 hit.
SMARTiView protein in SMART
SM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
SUPFAMiSSF52540. SSF52540. 1 hit.
PROSITEiView protein in PROSITE
PS00039. DEAD_ATP_HELICASE. 1 hit.
PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
PS51195. Q_MOTIF. 1 hit.

Sequencei

Sequence statusi: Complete.

A0A1X7LWD6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKTHLTEKK FSDFALHPKV IEALENKGFH NCTPIQALAL PLTLANRDVA
60 70 80 90 100
GQAQTGTGKT MAFLTSTFHY LLSHPVPENR QVNQPRALIM APTRELAVQI
110 120 130 140 150
HSDAEPLAQA TGLKLGLAYG GDGYDKQLKV LESGVDILIG TTGRLIDYAK
160 170 180 190 200
QNHINLGAIQ VVVLDEADRM YDLGFIKDIR WLFRRMPPVT QRLNMLFSAT
210 220 230 240 250
LSYRVRELAF EQMNNAEYVE VEPEQRTGHR IKEELFYPSN EEKMRLLQTL
260 270 280 290 300
LEEEWPDRAI IFANTKHRCE DIWGHLAADG HRVGLLTGDV AQKKRLRILE
310 320 330 340 350
EFTRGDLDIL VATDVAARGL HIPAVTHVFN YDLPDDCEDY VHRIGRTGRA
360 370 380 390 400
GASGHSISLA CEDYALNLSA IETYIGHAIP VSKYNAEALL NEFPPPKRLT
410 420
RSRPGNGPRR GGAPRGNRRR AG
Length:422
Mass (Da):47,254
Last modified:July 5, 2017 - v1
Checksum:iED575FB2BD58EA8A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FXAS01000025 Genomic DNA. Translation: SMG58216.1.
RefSeqiWP_008455563.1. NZ_FXAS01000025.1.

Similar proteinsi

Entry informationi

Entry nameiA0A1X7LWD6_9ENTR
AccessioniPrimary (citable) accession number: A0A1X7LWD6
Entry historyiIntegrated into UniProtKB/TrEMBL: July 5, 2017
Last sequence update: July 5, 2017
Last modified: October 25, 2017
This is version 4 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported