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Protein

ATP-dependent RNA helicase RhlB

Gene

rhlB

Organism
Rouxiella silvae
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

DEAD-box RNA helicase involved in RNA degradation. Has RNA-dependent ATPase activity and unwinds double-stranded RNA.UniRule annotationSAAS annotation

Catalytic activityi

ATP + H2O = ADP + phosphate.UniRule annotationSAAS annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionHelicaseUniRule annotationSAAS annotationImported, Hydrolase, RNA-bindingUniRule annotationSAAS annotation
LigandATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
ATP-dependent RNA helicase RhlBUniRule annotationSAAS annotation (EC:3.6.4.13UniRule annotationSAAS annotation)
Gene namesi
Name:rhlBUniRule annotation
ORF Names:BS639_03305Imported
OrganismiRouxiella silvaeImported
Taxonomic identifieri1646373 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesYersiniaceaeRouxiella
Proteomesi
  • UP000192722 Componenti: Unassembled WGS sequence

Subcellular locationi

A0A1X0W757:
  • Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Interactioni

Subunit structurei

Component of the RNA degradosome, which is a multiprotein complex involved in RNA processing and mRNA degradation.UniRule annotationSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini9 – 37Q_MOTIFInterPro annotationAdd BLAST29
Domaini40 – 219Helicase ATP-bindingInterPro annotationAdd BLAST180
Domaini245 – 390Helicase C-terminalInterPro annotationAdd BLAST146

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi9 – 37Q motifPROSITE-ProRule annotationAdd BLAST29

Sequence similaritiesi

Belongs to the DEAD box helicase family. RhlB subfamily.UniRule annotationSAAS annotation

Family and domain databases

CDDicd00079. HELICc. 1 hit.
HAMAPiMF_00661. DEAD_helicase_RhlB. 1 hit.
InterProiView protein in InterPro
IPR011545. DEAD/DEAH_box_helicase_dom.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR000629. RNA-helicase_DEAD-box_CS.
IPR023554. RNA_helicase_ATP-dep_RhlB.
IPR014014. RNA_helicase_DEAD_Q_motif.
PfamiView protein in Pfam
PF00270. DEAD. 1 hit.
PF00271. Helicase_C. 1 hit.
SMARTiView protein in SMART
SM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
SUPFAMiSSF52540. SSF52540. 1 hit.
PROSITEiView protein in PROSITE
PS00039. DEAD_ATP_HELICASE. 1 hit.
PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
PS51195. Q_MOTIF. 1 hit.

Sequencei

Sequence statusi: Complete.

A0A1X0W757-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKTHLTEQK FSDFALHPLA VEALEKKGFH YCTPIQALAL PITLSGRDVA
60 70 80 90 100
GQAQTGTGKT LAFLASTFHY LLSNPAAEGR QTNQPRALIM APTRELAVQI
110 120 130 140 150
HSDAEALSES TGLKLGLAYG GDGYDKQLKV LESGVDILIG TTGRLIDYVK
160 170 180 190 200
QNHVNLGAIQ VVVLDEADRM FDLGFIKDIR WLFRRMPPAT QRLNMLFSAT
210 220 230 240 250
LSYRVKELAF ENMNNAESIE IEPEQKTGHR IQEELFYPSN EEKMRLLQTL
260 270 280 290 300
IEEEWPDRCI IFANTKHRCE DVWGHLAADG HRVGLLTGDV AQKKRLRVLE
310 320 330 340 350
DFTKGDIDIL VATDVAARGL HIPAVTHVFN YDLPDDCEDY VHRIGRTGRA
360 370 380 390 400
GLSGHSISLA CEEYALNLPA IETYTGHSIP VSKYNSDALL TELPAPKRLA
410 420 430
RTRNGNGPRR NSSSSSRRGG SAPRNNRKRS G
Length:431
Mass (Da):47,853
Last modified:July 5, 2017 - v1
Checksum:i840C886489E4C669
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
MRWD01000005 Genomic DNA. Translation: ORJ22628.1.
RefSeqiWP_055773390.1. NZ_MRWD01000005.1.

Similar proteinsi

Entry informationi

Entry nameiA0A1X0W757_9GAMM
AccessioniPrimary (citable) accession number: A0A1X0W757
Entry historyiIntegrated into UniProtKB/TrEMBL: July 5, 2017
Last sequence update: July 5, 2017
Last modified: October 25, 2017
This is version 4 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

Keywords - Technical termi

Complete proteomeImported