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Protein
Submitted name:

transcription factor SOX-5 isoform X4

Gene

sox5

Organism
Scleropages formosus (Asian bonytongue)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi528 – 596HMG boxPROSITE-ProRule annotationAdd BLAST69

GO - Molecular functioni

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
transcription factor SOX-5 isoform X4Imported
Gene namesi
Name:sox5Imported
OrganismiScleropages formosus (Asian bonytongue)Imported
Taxonomic identifieri113540 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOsteoglossocephalaOsteoglossomorphaOsteoglossiformesOsteoglossidaeScleropages
Proteomesi
  • UP000192224 Componenti: Genome assembly

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini528 – 596HMG boxInterPro annotationAdd BLAST69

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili189 – 209Sequence analysisAdd BLAST21
Coiled coili211 – 269Sequence analysisAdd BLAST59
Coiled coili427 – 454Sequence analysisAdd BLAST28
Coiled coili468 – 488Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Family and domain databases

Gene3Di1.10.30.10. 1 hit.
InterProiView protein in InterPro
IPR009071. HMG_box_dom.
IPR036910. HMG_box_dom_sf.
PfamiView protein in Pfam
PF00505. HMG_box. 1 hit.
SMARTiView protein in SMART
SM00398. HMG. 1 hit.
SUPFAMiSSF47095. SSF47095. 1 hit.
PROSITEiView protein in PROSITE
PS50118. HMG_BOX_2. 1 hit.

Sequencei

Sequence statusi: Complete.

A0A1W4ZQX1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYRSEATTAF DSSRMSSKRP ASPYGGTDGE VVMATSRQRL EDEESDGQPV
60 70 80 90 100
IHLPLNSYSS KVSPRSLDSP ASLHNSTEHD GAKGAPLSPY AQHTSSTSPA
110 120 130 140 150
KMEDGGRPGS EPGTAAAAAV AAAGTPERRK GSLADVVDTL KQRKMEELIK
160 170 180 190 200
NEPEEPPSIE RLLSKDWKDK LLAMGSGNFG EIKGTPDSLA EKERQLMGMI
210 220 230 240 250
TQLTSLREQL LAAHEEQKKL AASQIEKQRQ QMELAKQQQD QIARQQQQLL
260 270 280 290 300
QQQHKINLLQ QQIQQVQGQL PPLMIPVFPP DQRTLAAAAA QQGFLLPPSF
310 320 330 340 350
SYKPGCSDPY PLQLIPTTMA AAAAATPGLG PLQLQQLYAA QLAAMQVSPG
360 370 380 390 400
AKHGNMPQAN LGTHSPTSGQ TDKCRSTPPP KPKVPTVKLG PGSLKHSTPA
410 420 430 440 450
SISSSATRVG SIDLLSSITS GGYLNDHEAV SKAFQEARQM KEQLKREQQV
460 470 480 490 500
LDAKVAVVSS LGISSSRSEK EKAALENLTQ QLKHSEEGKF SHAMMDLNIS
510 520 530 540 550
GDSDGSPSVS DSRMFRESRG RGNSEPHIKR PMNAFMVWAK DERRKILQAF
560 570 580 590 600
PDMHNSNISK ILGSRWKAMT NLEKQPYYEE QARLSKQHLE KYPDYKYKPR
610 620 630 640 650
PKRTCLVDGK KLRIGEYKAI MRNRRQEMRQ YFTVGTQGQL PLSSAGVVYP
660 670 680 690 700
GALPMAGMPS PQMPSEHSSM SSSPEPAVPV IQSPYLGGLK GDEPRVKEEE
710 720 730
LRLDDGNADA YEDFDYEEED GEYGSDSENH IAEQAH
Length:736
Mass (Da):80,677
Last modified:June 7, 2017 - v1
Checksum:i3CA02EDCF9E77F54
GO

Sequence databases

RefSeqiXP_018602901.1. XM_018747385.1.

Genome annotation databases

GeneIDi108931552.

Similar proteinsi

Entry informationi

Entry nameiA0A1W4ZQX1_9TELE
AccessioniPrimary (citable) accession number: A0A1W4ZQX1
Entry historyiIntegrated into UniProtKB/TrEMBL: June 7, 2017
Last sequence update: June 7, 2017
Last modified: December 20, 2017
This is version 6 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported