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Protein

RNA polymerase sigma factor RpoD

Gene

rpoD

Organism
Campylobacter pinnipediorum subsp. caledonicus
Status
Unreviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.SAAS annotation

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi581 – 600H-T-H motifUniRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingUniRule annotationSAAS annotation, NucleotidyltransferaseImported, Sigma factorUniRule annotationSAAS annotation, Transferase
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma factor RpoDUniRule annotation
Alternative name(s):
Sigma-70UniRule annotation
Gene namesi
Name:rpoDUniRule annotationImported
ORF Names:CPIN18021_0620Imported
OrganismiCampylobacter pinnipediorum subsp. caledonicusImported
Taxonomic identifieri1874362 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesCampylobacteraceaeCampylobacter
Proteomesi
  • UP000190868 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

CytoplasmUniRule annotation

Interactioni

Subunit structurei

Interacts transiently with the RNA polymerase catalytic core.UniRule annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini410 – 423RNA_pol_sigma70InterPro annotationAdd BLAST14
Domaini580 – 606RNA_pol_sigma70InterPro annotationAdd BLAST27

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni386 – 456Sigma-70 factor domain-2UniRule annotationAdd BLAST71
Regioni465 – 541Sigma-70 factor domain-3UniRule annotationAdd BLAST77

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili60 – 87Sequence analysisAdd BLAST28
Coiled coili544 – 564Sequence analysisAdd BLAST21

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi410 – 413Interaction with polymerase core subunit RpoCUniRule annotation4

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

KOiK03086.

Family and domain databases

Gene3Di1.10.10.10. 2 hits.
HAMAPiMF_00963. Sigma70_RpoD_SigA. 1 hit.
InterProiView protein in InterPro
IPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR009042. RNA_pol_sigma70_r1_2.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR012760. RNA_pol_sigma_RpoD_C.
IPR028630. Sigma70_RpoD.
IPR036388. WH-like_DNA-bd_sf.
PfamiView protein in Pfam
PF00140. Sigma70_r1_2. 1 hit.
PF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02393. RpoD_Cterm. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEiView protein in PROSITE
PS00715. SIGMA70_1. 1 hit.
PS00716. SIGMA70_2. 1 hit.

Sequencei

Sequence statusi: Complete.

A0A1S6U6S1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSAKEAFSQ IEELFAENAK GFITYEKLVK LFDKAPTATI VKKIEALMNK
60 70 80 90 100
NKTQLLTAAE VAKMKNLADA KKRKKEAEEA QEENIDDDFD LANDSDYLEW
110 120 130 140 150
SRSDSPVRMY LREMGQISLL TKDEEVEISK KIELGEDIII DAFCSVPFLI
160 170 180 190 200
DFILDYKEPL INRERRVKEL FKSFEEDSDS DDDNDDDNDD DSSDLDDNNS
210 220 230 240 250
ETPASKKVAK NDKRALKVIE SFKALEKAKK EWLKTANKQG EIDKDDIFAN
260 270 280 290 300
INIAFKKKIL KDKLMDLGPT SKLISEIVKS METALKSDDE FDRELKRLEY
310 320 330 340 350
RLPMFSDELK KNHKGILKDI LKLSKDDIIA RVPEATMVST YVEIKKLFQT
360 370 380 390 400
KEASKQGFNL EPAKLKSVLE QIKRGKKISD EAKTRMAKSN LRLVVSIAKR
410 420 430 440 450
YTNRGLPFLD LIQEGNIGLM KAVDKFEYRK GYKFSTYATW WIRQAISRAI
460 470 480 490 500
ADQARTIRIP IHMIETINRI NKINRKYLQE EGKEPDVSVI AKEVGLSVDK
510 520 530 540 550
VKQVIKITKE PISLEAPIAN EDDGKFGDFV EDKNSLSPME HILKNDLREQ
560 570 580 590 600
IDDVLSQLND REKAVICMRF GLLDDESDRT LEEIGKALNV TRERVRQIES
610 620
SAIKKLKHPK VGRKLKNYIE G
Length:621
Mass (Da):71,297
Last modified:May 10, 2017 - v1
Checksum:i8A3FF41427785F20
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP017258 Genomic DNA. Translation: AQW87441.1.

Genome annotation databases

KEGGicpin:CPIN18020_0615.

Similar proteinsi

Entry informationi

Entry nameiA0A1S6U6S1_9PROT
AccessioniPrimary (citable) accession number: A0A1S6U6S1
Entry historyiIntegrated into UniProtKB/TrEMBL: May 10, 2017
Last sequence update: May 10, 2017
Last modified: December 20, 2017
This is version 7 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

Lacks conserved residue(s) required for the propagation of feature annotation.UniRule annotation

Keywords - Technical termi

Complete proteome, Reference proteomeImported