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Protein
Submitted name:

transcription factor SOX-17

Gene

Sox17

Organism
Dipodomys ordii (Ord's kangaroo rat)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi69 – 137HMG boxPROSITE-ProRule annotationAdd BLAST69

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
transcription factor SOX-17Imported
Gene namesi
Name:Sox17Imported
OrganismiDipodomys ordii (Ord's kangaroo rat)Imported
Taxonomic identifieri10020 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaCastorimorphaHeteromyidaeDipodomyinaeDipodomys
Proteomesi
  • UP000081671 Componenti: Genome assembly

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotation

Interactioni

GO - Molecular functioni

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini69 – 137HMG boxInterPro annotationAdd BLAST69
Domaini281 – 407Sox C-terminalInterPro annotationAdd BLAST127

Family and domain databases

Gene3Di1.10.30.10, 1 hit
InterProiView protein in InterPro
IPR009071 HMG_box_dom
IPR036910 HMG_box_dom_sf
IPR033392 Sox7/17/18_central
IPR021934 Sox_C
PfamiView protein in Pfam
PF00505 HMG_box, 1 hit
PF12067 Sox17_18_mid, 1 hit
SMARTiView protein in SMART
SM00398 HMG, 1 hit
SUPFAMiSSF47095 SSF47095, 1 hit
PROSITEiView protein in PROSITE
PS50118 HMG_BOX_2, 1 hit
PS51516 SOX_C, 1 hit

Sequencei

Sequence statusi: Complete.

A0A1S3EMN3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSPDAGYAS DDQSQPRSAL PAVMAGLGPC PWAESLSPLG DVKVKGGEAA
60 70 80 90 100
ASSGALSGAP GRAKGESRIR RPMNAFMVWA KDERKRLAQQ NPDLHNAELS
110 120 130 140 150
KMLGKSWKAL TLAEKRPFVE EAERLRVQHM QDHPNYKYRP RRRKQVKRLK
160 170 180 190 200
RVEGGFLHGL AEPQAAALGP DGGRVAMDGL GLPFPEQGFP AGPPMLAPHV
210 220 230 240 250
GGHYRDCQGL GAPPLDGYPL PTPDTSPLDG VDPDPAFFAA PMPGDCPAPA
260 270 280 290 300
TYNYPQVSDY AMPPEPPAGH MHPRLGHEPA GPSMPGLLAP PSALHMYYGA
310 320 330 340 350
MGSPAAGGGR GFHVQPAQSP AAGPGQPSPP PEALPCRDGT DPTQPAELLG
360 370 380 390 400
EVDRTEFEQY LHFVCKPEMG LPYQGHDCGV SLPDSHGAIS SVVSDASSAV

YYCNYPDV
Length:408
Mass (Da):43,215
Last modified:April 12, 2017 - v1
Checksum:i1A7EAF712C7DFC7D
GO

Sequence databases

RefSeqiXP_012864737.1, XM_013009283.1

Genome annotation databases

GeneIDi105980449

Similar proteinsi

Entry informationi

Entry nameiA0A1S3EMN3_DIPOR
AccessioniPrimary (citable) accession number: A0A1S3EMN3
Entry historyiIntegrated into UniProtKB/TrEMBL: April 12, 2017
Last sequence update: April 12, 2017
Last modified: April 25, 2018
This is version 7 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health