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Protein
Submitted name:

ABC transporter B family member 11

Gene

GA_TR6601_c0_g1_i1_g.22380

Organism
Noccaea caerulescens (Alpine penny-cress) (Thlaspi caerulescens)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi460 – 467ATPPROSITE-ProRule annotation8
Nucleotide bindingi1117 – 1124ATPPROSITE-ProRule annotation8

GO - Molecular functioni

Keywordsi

LigandATP-bindingPROSITE-ProRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Submitted name:
ABC transporter B family member 11Imported
Gene namesi
ORF Names:GA_TR6601_c0_g1_i1_g.22380Imported
OrganismiNoccaea caerulescens (Alpine penny-cress) (Thlaspi caerulescens)Imported
Taxonomic identifieri107243 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeColuteocarpeaeNoccaea

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei99 – 123HelicalSequence analysisAdd BLAST25
Transmembranei150 – 171HelicalSequence analysisAdd BLAST22
Transmembranei248 – 269HelicalSequence analysisAdd BLAST22
Transmembranei329 – 351HelicalSequence analysisAdd BLAST23
Transmembranei363 – 396HelicalSequence analysisAdd BLAST34
Transmembranei757 – 781HelicalSequence analysisAdd BLAST25
Transmembranei801 – 824HelicalSequence analysisAdd BLAST24
Transmembranei894 – 917HelicalSequence analysisAdd BLAST24
Transmembranei983 – 1006HelicalSequence analysisAdd BLAST24
Transmembranei1018 – 1036HelicalSequence analysisAdd BLAST19

Keywords - Cellular componenti

Membrane

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini105 – 390ABC transmembrane type-1InterPro annotationAdd BLAST286
Domaini425 – 661ABC transporterInterPro annotationAdd BLAST237
Domaini761 – 1047ABC transmembrane type-1InterPro annotationAdd BLAST287
Domaini1082 – 1321ABC transporterInterPro annotationAdd BLAST240

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Family and domain databases

Gene3Di1.20.1560.102 hits
InterProiView protein in InterPro
IPR003593 AAA+_ATPase
IPR011527 ABC1_TM_dom
IPR036640 ABC1_TM_sf
IPR003439 ABC_transporter-like
IPR017871 ABC_transporter_CS
IPR027417 P-loop_NTPase
PfamiView protein in Pfam
PF00664 ABC_membrane, 2 hits
PF00005 ABC_tran, 2 hits
SMARTiView protein in SMART
SM00382 AAA, 2 hits
SUPFAMiSSF52540 SSF52540, 2 hits
SSF90123 SSF90123, 2 hits
PROSITEiView protein in PROSITE
PS50929 ABC_TM1F, 2 hits
PS00211 ABC_TRANSPORTER_1, 2 hits
PS50893 ABC_TRANSPORTER_2, 2 hits

Sequencei

Sequence statusi: Fragment.

A0A1J3EEV9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
LNLIIIKQVL TSLRQHTQFR LTSYSPKVSE SFTFRSFTSS APKMNSDDPG
60 70 80 90 100
EGDSVSHEPS TSKSPKEGEE EETKKEKSDE KPKTVPFYKL FAFADSVDVF
110 120 130 140 150
LMICGSVGAI GNGVSLPLMT LLFGDLIDSF GQNQNNKDIV DLVSKVCLKF
160 170 180 190 200
VYLGLGTLGA AFLQVACWMI TGERQAARIR SMYLKTILRQ DIGFFDVETN
210 220 230 240 250
TGEVVGRMSG DTVLIQDAMG EKVGKFIQLV GTFVGGFALA FAKGWLLTLV
260 270 280 290 300
MLTSIPLLAM AGAAMAIIVT RASSRGQAAY AKAATVVEQT IGSIRTVASF
310 320 330 340 350
TGEKQAINSY KKFITSAYKQ STQQGFSTGL GLGVMFMVFF SSYALAIWFG
360 370 380 390 400
GKMIVEKGYT GGAVINVIII VVAGSMSLGQ TSPCLTAFAA GQAAAYKMFE
410 420 430 440 450
TIKRKPLIDA YDLNGKVLED IRGDIELKDV HFSYPARPDE DIFDGFSLFI
460 470 480 490 500
PSGATAALVG ESGSGKSTVI SLIERFYDPK AGEILIDGVN LKEFQLKWIR
510 520 530 540 550
SKIGLVSQEP VLFSSSIMEN IAYGKENATV QEIKAATELA NAAKFIDKLP
560 570 580 590 600
QGLDTMVGEH GTQLSGGQKQ RIAIARAILK DPRILLLDEA TSALDAESER
610 620 630 640 650
VVQEALDRVM VNRTTVIVAH RLSTVRNADM IAVIHRGKMV EKGSHSELLR
660 670 680 690 700
DPEGAYSQLI RLQEMNKDHD GAKTSGSSLR NSSLKKSMEG SIVSGGGSSS
710 720 730 740 750
VGNSSRHHSL NVLGLTAGLE LGRSGRAGQE ETATASTQEE LPKVSLTRIA
760 770 780 790 800
ALNKPEIPVL LLGTVAAAIN GAIFPLFGIL ISRVIEAFFK PADQLKKDSR
810 820 830 840 850
FWAIIFVALG VTSLIVSPAQ MYLFSIAGGK LIRRIRSMCF EKVVHMEVGW
860 870 880 890 900
FDEPQNSSGT MGARLSADAA LIRALVGDAL SLMVQNAASA ASGLIIAFTA
910 920 930 940 950
SWELALIILV MLPLIGINGY IQVKFMKGFS ADAKSKYEDA SQVANDAVGS
960 970 980 990 1000
IRTVASFCAE EKVMQMYKKQ CEGPIKDGIK QGFISGLGFG FSFCILFCVY
1010 1020 1030 1040 1050
ATSFYAGARL VEDGKTTFNN VFQVFFALTM AAIGISQSST FAPDSSKAKV
1060 1070 1080 1090 1100
AAASIFGIID RKSKIDSSDE SGTVLENVKG DIELRHISFT YPARPDIQIF
1110 1120 1130 1140 1150
RDLCLTIRAG KTVAIVGESG SGKSTVISLL QRFYDPDSGH ITLDGVELKK
1160 1170 1180 1190 1200
LRLKWLRLQM GLVEQEPVLF NDTIRANIAY GKGSEVAATE SEIVAAAELA
1210 1220 1230 1240 1250
YAHNFISSIQ QGYDTVVGER GIQLSGGQKQ RVAIARAIVK EPKILLLDEA
1260 1270 1280 1290 1300
TSALDAESER VVQDALDRVM MNRTTVVVAH RLSTIKNADV IAVIKNGVIA
1310 1320
EKGTHETLIK IEGGVYASLV QLHMTASN
Length:1,328
Mass (Da):143,182
Last modified:February 15, 2017 - v1
Checksum:iB59BBAE22BBB9296
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GEVI01004692 Transcribed RNA Translation: JAU27628.1

Similar proteinsi

Entry informationi

Entry nameiA0A1J3EEV9_NOCCA
AccessioniPrimary (citable) accession number: A0A1J3EEV9
Entry historyiIntegrated into UniProtKB/TrEMBL: February 15, 2017
Last sequence update: February 15, 2017
Last modified: October 25, 2017
This is version 5 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)