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Protein
Submitted name:

Uncharacterized protein

Gene
N/A
Organism
Caenorhabditis tropicalis
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

Keywordsi

Molecular functionIon channelUniRule annotation
Biological processIon transport, Transport

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
OrganismiCaenorhabditis tropicalisImported
Taxonomic identifieri1561998 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000095282 Componenti: Whole Genome Shotgun Assembly

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei16 – 38HelicalSequence analysisAdd BLAST23
Transmembranei280 – 302HelicalSequence analysisAdd BLAST23
Transmembranei311 – 329HelicalSequence analysisAdd BLAST19
Transmembranei341 – 365HelicalSequence analysisAdd BLAST25
Transmembranei386 – 416HelicalSequence analysisAdd BLAST31

Keywords - Cellular componenti

Membrane

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini55 – 278Neur_chan_LBDInterPro annotationAdd BLAST224

Sequence similaritiesi

Belongs to the ligand-gated ion channel (TC 1.A.9) family. [View classification]UniRule annotationSAAS annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Family and domain databases

Gene3Di1.20.58.390. 1 hit.
2.70.170.10. 1 hit.
InterProiView protein in InterPro
IPR006202. Neur_chan_lig-bd.
IPR036734. Neur_chan_lig-bd_sf.
IPR006201. Neur_channel.
IPR036719. Neuro-gated_channel_TM_sf.
IPR018000. Neurotransmitter_ion_chnl_CS.
PANTHERiPTHR18945. PTHR18945. 1 hit.
PfamiView protein in Pfam
PF02931. Neur_chan_LBD. 1 hit.
PRINTSiPR00252. NRIONCHANNEL.
SUPFAMiSSF63712. SSF63712. 1 hit.
SSF90112. SSF90112. 1 hit.
PROSITEiView protein in PROSITE
PS00236. NEUROTR_ION_CHANNEL. 1 hit.

Sequencei

Sequence statusi: Complete.

A0A1I7SXS6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHSIDFVRHL INSFSVFYLA MFFVLITVIL EFTSAFYYDP VYYVPKYKDF
60 70 80 90 100
LDVQSKLAKK LFDDYDPTLS PVYTWTDIER PIGYDKEGPN RWNYTVFLYY
110 120 130 140 150
LKLVEVQEPE EKVSVVMELM EYWTDARLSW NASHYKNTTT FYARQERVWS
160 170 180 190 200
PTLTAFGVND ILDFRDQDNR LVCIDQSGFV WNYLSVRISA NCQMDVSRFP
210 220 230 240 250
FDTQICQIRF CLPIFYRVQV EVLNEIYKGI MDENIFKTMG NSEWKLINLT
260 270 280 290 300
NRVEVLRYND NMGNMDLAIF EITIRRNPLY YIYMIVFPSF IINFVSIVGV
310 320 330 340 350
FLNGADKMSR LNVGLTNIMT MTFILGVMAD KIPRTGNIPL LGIYIIINLV
360 370 380 390 400
IMLIAIAIVT AITELRRWAT PKLRMKKTAL RAQMEIFLGP PLEYTCAIIL
410 420
ELMTCANFLV MVGLWFDDGL
Length:420
Mass (Da):49,207
Last modified:January 18, 2017 - v1
Checksum:i8BC770B4B00D110B
GO

Genome annotation databases

WBParaSiteiCsp11.Scaffold171.g637.t2; Csp11.Scaffold171.g637.t2; Csp11.Scaffold171.g637.

Similar proteinsi

Entry informationi

Entry nameiA0A1I7SXS6_9PELO
AccessioniPrimary (citable) accession number: A0A1I7SXS6
Entry historyiIntegrated into UniProtKB/TrEMBL: January 18, 2017
Last sequence update: January 18, 2017
Last modified: October 25, 2017
This is version 5 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported