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Protein
Submitted name:

Uncharacterized protein

Gene
N/A
Organism
Caenorhabditis tropicalis
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

Keywordsi

Molecular functionIon channelUniRule annotation
Biological processIon transport, Transport

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
OrganismiCaenorhabditis tropicalisImported
Taxonomic identifieri1561998 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000095282 Componenti: Whole Genome Shotgun Assembly

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei260 – 282HelicalSequence analysisAdd BLAST23
Transmembranei291 – 309HelicalSequence analysisAdd BLAST19
Transmembranei321 – 345HelicalSequence analysisAdd BLAST25
Transmembranei366 – 396HelicalSequence analysisAdd BLAST31

Keywords - Cellular componenti

Membrane

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini35 – 258Neur_chan_LBDInterPro annotationAdd BLAST224

Sequence similaritiesi

Belongs to the ligand-gated ion channel (TC 1.A.9) family. [View classification]UniRule annotationSAAS annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Family and domain databases

Gene3Di1.20.58.390. 1 hit.
2.70.170.10. 1 hit.
InterProiView protein in InterPro
IPR006202. Neur_chan_lig-bd.
IPR036734. Neur_chan_lig-bd_sf.
IPR006201. Neur_channel.
IPR036719. Neuro-gated_channel_TM_sf.
IPR018000. Neurotransmitter_ion_chnl_CS.
PANTHERiPTHR18945. PTHR18945. 1 hit.
PfamiView protein in Pfam
PF02931. Neur_chan_LBD. 1 hit.
PRINTSiPR00252. NRIONCHANNEL.
SUPFAMiSSF63712. SSF63712. 1 hit.
SSF90112. SSF90112. 1 hit.
PROSITEiView protein in PROSITE
PS00236. NEUROTR_ION_CHANNEL. 1 hit.

Sequencei

Sequence statusi: Complete.

A0A1I7SXS5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFFVLITVIL EFTSAFYYDP VYYVPKYKDF LDVQSKLAKK LFDDYDPTLS
60 70 80 90 100
PVYTWTDIER PIGYDKEGPN RWNYTVFLYY LKLVEVQEPE EKVSVVMELM
110 120 130 140 150
EYWTDARLSW NASHYKNTTT FYARQERVWS PTLTAFGVND ILDFRDQDNR
160 170 180 190 200
LVCIDQSGFV WNYLSVRISA NCQMDVSRFP FDTQICQIRF CLPIFYRVQV
210 220 230 240 250
EVLNEIYKGI MDENIFKTMG NSEWKLINLT NRVEVLRYND NMGNMDLAIF
260 270 280 290 300
EITIRRNPLY YIYMIVFPSF IINFVSIVGV FLNGADKMSR LNVGLTNIMT
310 320 330 340 350
MTFILGVMAD KIPRTGNIPL LGIYIIINLV IMLIAIAIVT AITELRRWAT
360 370 380 390 400
PKLRMKKTAL RAQMEIFLGP PLEYTCAIIL ELMTCANFLV MVGLWFDDGL
Length:400
Mass (Da):46,828
Last modified:January 18, 2017 - v1
Checksum:i574DDAD1FAEFADB1
GO

Genome annotation databases

WBParaSiteiCsp11.Scaffold171.g637.t1; Csp11.Scaffold171.g637.t1; Csp11.Scaffold171.g637.

Similar proteinsi

Entry informationi

Entry nameiA0A1I7SXS5_9PELO
AccessioniPrimary (citable) accession number: A0A1I7SXS5
Entry historyiIntegrated into UniProtKB/TrEMBL: January 18, 2017
Last sequence update: January 18, 2017
Last modified: October 25, 2017
This is version 5 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported