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Protein

DNA-directed RNA polymerase subunit beta

Gene

103629391

Organism
Zea mays (Maize)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionNucleotidyltransferaseUniRule annotation, Transferase
Biological processTranscription

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit betaUniRule annotation (EC:2.7.7.6UniRule annotation)
Gene namesi
Name:103629391Imported
ORF Names:ZEAMMB73_Zm00001d035960Imported
OrganismiZea mays (Maize)Imported
Taxonomic identifieri4577 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaePACMAD cladePanicoideaeAndropogonodaeAndropogoneaeTripsacinaeZea
Proteomesi
  • UP000007305 Componenti: Chromosome 6

Subcellular locationi

    Keywords - Cellular componenti

    DNA-directed RNA polymeraseUniRule annotationImported

    Expressioni

    Gene expression databases

    ExpressionAtlasiA0A1D6LJV3. baseline and differential.

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    Domaini2 – 124RNA_pol_Rpb2_2InterPro annotationAdd BLAST123
    Domaini201 – 265RNA_pol_Rpb2_3InterPro annotationAdd BLAST65
    Domaini302 – 361RNA_pol_Rpb2_4InterPro annotationAdd BLAST60
    Domaini384 – 429RNA_pol_Rpb2_5InterPro annotationAdd BLAST46
    Domaini437 – 813RNA_pol_Rpb2_6InterPro annotationAdd BLAST377
    Domaini815 – 905RNA_pol_Rpb2_7InterPro annotationAdd BLAST91

    Sequence similaritiesi

    Belongs to the RNA polymerase beta chain family.UniRule annotation

    Family and domain databases

    CDDicd00653. RNA_pol_B_RPB2. 1 hit.
    Gene3Di2.40.270.10. 1 hit.
    InterProiView protein in InterPro
    IPR015712. DNA-dir_RNA_pol_su2.
    IPR007120. DNA-dir_RNAP_su2_dom.
    IPR037033. DNA-dir_RNAP_su2_hyb_sf.
    IPR007121. RNA_pol_bsu_CS.
    IPR007642. RNA_pol_Rpb2_2.
    IPR007645. RNA_pol_Rpb2_3.
    IPR007646. RNA_pol_Rpb2_4.
    IPR007647. RNA_pol_Rpb2_5.
    IPR007641. RNA_pol_Rpb2_7.
    PANTHERiPTHR20856. PTHR20856. 1 hit.
    PfamiView protein in Pfam
    PF04561. RNA_pol_Rpb2_2. 1 hit.
    PF04565. RNA_pol_Rpb2_3. 1 hit.
    PF04566. RNA_pol_Rpb2_4. 1 hit.
    PF04567. RNA_pol_Rpb2_5. 1 hit.
    PF00562. RNA_pol_Rpb2_6. 1 hit.
    PF04560. RNA_pol_Rpb2_7. 1 hit.
    PROSITEiView protein in PROSITE
    PS01166. RNA_POL_BETA. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A0A1D6LJV3-1 [UniParc]FASTAAdd to basket

    « Hide

            10         20         30         40         50
    MPVMLVMKAM GMESDQETVQ MVGRDPRYGD LLFPSIQECA SERIYTRQRA
    60 70 80 90 100
    LQYMDEKVTY PGATNQKEGR SYSILRDVFI AHVPVKNGNL RPKCIYTALM
    110 120 130 140 150
    LRRMMDAIVN SDTFDDKDYV GNKRFELSGQ LISLLFEDLF KTMNSQAVER
    160 170 180 190 200
    MNKNSDKTHS SPLDFSQLIM QDSITFGLER AISTGNWDIK RFRMHRKGVS
    210 220 230 240 250
    QVLSRLSYMA SLGYMTRITP QFEKTRKTSG PRALQPSQWG MLCPCDTPEG
    260 270 280 290 300
    EACGLTKNLA LLSHVTTDQE EGPLIYLCYS LGVEDLLSLS SEEIHTPGSF
    310 320 330 340 350
    LVMFNGLILG KHKDPQRLVI DLRNLRRSNV IGEFVSIFIN EKQHCVHIAS
    360 370 380 390 400
    DGGRVCRPLI IADMGISRID ETHMEKLRHG TCGFDDFLRD GLIEYLDVNE
    410 420 430 440 450
    ENNALIALYE HMDQDDVERS SITHIEIEPL SILGVVSGLI PYPHHNQSPR
    460 470 480 490 500
    NTYQCAMGKQ AMGNIAYNQL FRADSLLYLL VYAQRPLLTT KTIELVGYDK
    510 520 530 540 550
    LGAGQNATVA VMGYSGYDIE DAIVMNKSSL DRGFGRCIAL KKYTVLKDNY
    560 570 580 590 600
    GDGVSDMIVE PQRDNGVLIK QNMRALDEDG IAGPGQIIRN HDIYVNKRTP
    610 620 630 640 650
    KNTSKGIGRA LRESDYKDSP ALYKGVDGET TVVDRVMLCS DTNDKLSIKC
    660 670 680 690 700
    IIRHTRRPEV GDKFSSRHGQ KGVCGTIVQQ EDFPFSERGI CPDLIMNPHG
    710 720 730 740 750
    FPSRMTIGKM IELLGGKAGV SCGRFHYGSA FGEPSGNADK VADISSTLIK
    760 770 780 790 800
    HGFSYNGKDF LYSGILGQPL EAYIFMGPIY YQKLKHMVLD KMHARASGPR
    810 820 830 840 850
    VLLTRQPTEG RSRDGGLRLG EMERDCLIAY GASMLIFERL LLSSDPYQVQ
    860 870 880 890 900
    VCRKCGLLGY YNHKLKTSYC SMCKNGENMA KMRLPYACKL LFQELHAMNV

    VPRLKLTEV
    Length:909
    Mass (Da):102,171
    Last modified:November 30, 2016 - v1
    Checksum:i0FC33459BFD0F107
    GO

    Sequence databases

    Select the link destinations:
    EMBLi
    GenBanki
    DDBJi
    Links Updated
    CM000782 Genomic DNA. Translation: AQK80023.1.
    UniGeneiZm.82532.

    Genome annotation databases

    EnsemblPlantsiZm00001d035960_T003; Zm00001d035960_P003; Zm00001d035960.
    GrameneiZm00001d035960_T003; Zm00001d035960_P003; Zm00001d035960.

    Similar proteinsi

    Entry informationi

    Entry nameiA0A1D6LJV3_MAIZE
    AccessioniPrimary (citable) accession number: A0A1D6LJV3
    Entry historyiIntegrated into UniProtKB/TrEMBL: November 30, 2016
    Last sequence update: November 30, 2016
    Last modified: January 31, 2018
    This is version 12 of the entry and version 1 of the sequence. See complete history.
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported