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Protein

Ribonuclease 3

Gene

rnc

Organism
Rhizobium phaseoli
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.UniRule annotation

Catalytic activityi

Endonucleolytic cleavage to 5'-phosphomonoester.UniRule annotationSAAS annotation

Cofactori

Mg2+UniRule annotationSAAS annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi50MagnesiumUniRule annotation1
Active sitei54UniRule annotation1
Metal bindingi123MagnesiumUniRule annotation1
Active sitei126UniRule annotation1
Metal bindingi126MagnesiumUniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionEndonucleaseUniRule annotationSAAS annotation, Hydrolase, Nuclease, RNA-binding, rRNA-bindingUniRule annotationSAAS annotation
Biological processmRNA processingUniRule annotationSAAS annotation, rRNA processingUniRule annotationSAAS annotation, tRNA processingUniRule annotationSAAS annotation
LigandMagnesiumUniRule annotationSAAS annotation, Metal-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Ribonuclease 3UniRule annotation (EC:3.1.26.3UniRule annotation)
Alternative name(s):
Ribonuclease IIIUniRule annotation
Short name:
RNase IIIUniRule annotation
Gene namesi
Name:rncUniRule annotationImported
ORF Names:AMC80_CH01382Imported, AMC87_CH01405Imported
OrganismiRhizobium phaseoliImported
Taxonomic identifieri396 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
Proteomesi
  • UP000078601 Componenti: Chromosome
  • UP000078566 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Interactioni

Subunit structurei

Homodimer.UniRule annotationSAAS annotation

Structurei

3D structure databases

SMRiA0A192T7J5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini12 – 137RNase IIIInterPro annotationAdd BLAST126
Domaini162 – 231DRBMInterPro annotationAdd BLAST70

Sequence similaritiesi

Belongs to the ribonuclease III family.SAAS annotation

Phylogenomic databases

KOiK03685

Family and domain databases

CDDicd00593 RIBOc, 1 hit
Gene3Di1.10.1520.10, 1 hit
HAMAPiMF_00104 RNase_III, 1 hit
InterProiView protein in InterPro
IPR014720 dsRBD_dom
IPR011907 RNase_III
IPR000999 RNase_III_dom
IPR036389 RNase_III_sf
PfamiView protein in Pfam
PF00035 dsrm, 1 hit
PF14622 Ribonucleas_3_3, 1 hit
SMARTiView protein in SMART
SM00358 DSRM, 1 hit
SM00535 RIBOc, 1 hit
SUPFAMiSSF69065 SSF69065, 1 hit
TIGRFAMsiTIGR02191 RNaseIII, 1 hit
PROSITEiView protein in PROSITE
PS50137 DS_RBD, 1 hit
PS00517 RNASE_3_1, 1 hit
PS50142 RNASE_3_2, 1 hit

Sequencei

Sequence statusi: Complete.

A0A192T7J5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKAQTLSAA DRAKLESLIG HDFAEKERLD RALTHASART EKGSNYERLE
60 70 80 90 100
FLGDRVLGLC IAELLFRTFG TAGEGELSVR LNQLVSAETC AAVADELNLH
110 120 130 140 150
LYIRTGADVK KLTGKRMMNV RADVVESLIA AIYLDGGLEV ARRFILRYWQ
160 170 180 190 200
GRAVRADGAK RDAKTELQEW SHAKFGVTPL YRVDERSGPD HDPRFKVTVE
210 220 230
VAGIKPETGV ERSKRAAEQV AATKMLEREG IWQQSPAGN
Length:239
Mass (Da):26,511
Last modified:October 5, 2016 - v1
Checksum:iD39C37E8E70A5757
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP013537 Genomic DNA Translation: ANL46119.1
CP013574 Genomic DNA Translation: ANL90695.1
RefSeqiWP_004675053.1, NZ_NWSP01000020.1

Genome annotation databases

EnsemblBacteriaiANL46119; ANL46119; AMC87_CH01405
ANL90695; ANL90695; AMC80_CH01382
KEGGirpha:AMC79_CH01416
PATRICifig|396.10.peg.1498

Similar proteinsi

Entry informationi

Entry nameiA0A192T7J5_9RHIZ
AccessioniPrimary (citable) accession number: A0A192T7J5
Entry historyiIntegrated into UniProtKB/TrEMBL: October 5, 2016
Last sequence update: October 5, 2016
Last modified: March 28, 2018
This is version 14 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

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