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Protein

D-alanine--D-alanine ligase

Gene

ddl

Organism
Wolbachia endosymbiont of Laodelphax striatella
Status
Unreviewed-Annotation score: Annotation score: 3 out of 5-Protein inferred from homologyi

Functioni

Cell wall formation.UniRule annotationSAAS annotation

Catalytic activityi

ATP + 2 D-alanine = ADP + phosphate + D-alanyl-D-alanine.UniRule annotationSAAS annotation

Cofactori

Protein has several cofactor binding sites:
  • Mg2+UniRule annotation, Mn2+UniRule annotationNote: Binds 2 magnesium or manganese ions per subunit.UniRule annotation
  • Mn2+SAAS annotation

Pathwayi: peptidoglycan biosynthesis

This protein is involved in the pathway peptidoglycan biosynthesis, which is part of Cell wall biogenesis.UniRule annotationSAAS annotation
View all proteins of this organism that are known to be involved in the pathway peptidoglycan biosynthesis and in Cell wall biogenesis.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi251Magnesium or manganese 1UniRule annotation1
Metal bindingi265Magnesium or manganese 1UniRule annotation1
Metal bindingi265Magnesium or manganese 2UniRule annotation1
Metal bindingi267Magnesium or manganese 2UniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLigaseUniRule annotationSAAS annotationImported
Biological processCell shape, Cell wall biogenesis/degradationUniRule annotationSAAS annotation, Peptidoglycan synthesisUniRule annotationSAAS annotation
LigandATP-bindingPROSITE-ProRule annotationSAAS annotation, MagnesiumUniRule annotationSAAS annotation, ManganeseUniRule annotationSAAS annotation, Metal-bindingUniRule annotationSAAS annotation, Nucleotide-binding

Enzyme and pathway databases

UniPathwayiUPA00219.

Names & Taxonomyi

Protein namesi
Recommended name:
D-alanine--D-alanine ligaseUniRule annotationSAAS annotation (EC:6.3.2.4UniRule annotationSAAS annotation)
Alternative name(s):
D-Ala-D-Ala ligaseUniRule annotation
D-alanylalanine synthetaseUniRule annotation
Gene namesi
Name:ddlUniRule annotation
ORF Names:WSTR_00930Imported
OrganismiWolbachia endosymbiont of Laodelphax striatellaImported
Taxonomic identifieri368602 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesAnaplasmataceaeWolbachieaeWolbachia
Proteomesi
  • UP000077048 Componenti: Unassembled WGS sequence

Subcellular locationi

  • Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini103 – 299ATP-graspInterPro annotationAdd BLAST197

Sequence similaritiesi

Belongs to the D-alanine--D-alanine ligase family.UniRule annotationSAAS annotation

Family and domain databases

Gene3Di3.30.1490.20. 1 hit.
HAMAPiMF_00047. Dala_Dala_lig. 1 hit.
InterProiView protein in InterPro
IPR011761. ATP-grasp.
IPR013815. ATP_grasp_subdomain_1.
IPR000291. D-Ala_lig_Van_CS.
IPR005905. D_ala_D_ala.
IPR011095. Dala_Dala_lig_C.
IPR011127. Dala_Dala_lig_N.
IPR016185. PreATP-grasp_dom_sf.
PfamiView protein in Pfam
PF07478. Dala_Dala_lig_C. 1 hit.
PF01820. Dala_Dala_lig_N. 1 hit.
PIRSFiPIRSF039102. Ddl/VanB. 2 hits.
SUPFAMiSSF52440. SSF52440. 1 hit.
TIGRFAMsiTIGR01205. D_ala_D_alaTIGR. 1 hit.
PROSITEiView protein in PROSITE
PS50975. ATP_GRASP. 1 hit.
PS00843. DALA_DALA_LIGASE_1. 1 hit.

Sequencei

Sequence statusi: Complete.

A0A176Q8G9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLMVPTIAIL SGGFSCEREV SLMSGKAVKK ALDSLSYNAI EIDVDSNITE
60 70 80 90 100
KLRKINPGLA FIALHGPYGE DGCIQGLLEI LGIKYTHSGV MASAVAMNKV
110 120 130 140 150
MSKHIFRSLS IDTPKGYVIS REDLLKNNIK IDYPYVLKPI NEGSSIGVHM
160 170 180 190 200
TFSHEDYLEL KDNSSTIMEK MIIEEYIPGI ELHTAVLLNE AIGTMEIRPK
210 220 230 240 250
NKFYDYEAKY TDGFAEHIFP AKIPDNIYRM TLEHALKVHQ FLGCKTVSRS
260 270 280 290 300
DFRYNPQNNT LKMLEINTHP GFTELSLVPE IAKLTKGIDF NELVKIIVED
310
SLHHRSIRDQ ADVEQCY
Length:317
Mass (Da):35,731
Last modified:September 7, 2016 - v1
Checksum:i0A96FEE3EF8D8F2E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
LRUH01000016 Genomic DNA. Translation: OAB82379.1.
RefSeqiWP_063630602.1. NZ_LRUH01000016.1.

Genome annotation databases

EnsemblBacteriaiOAB82379; OAB82379; WSTR_00930.

Similar proteinsi

Entry informationi

Entry nameiA0A176Q8G9_9RICK
AccessioniPrimary (citable) accession number: A0A176Q8G9
Entry historyiIntegrated into UniProtKB/TrEMBL: September 7, 2016
Last sequence update: September 7, 2016
Last modified: November 22, 2017
This is version 13 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

Keywords - Technical termi

Complete proteomeImported