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Protein

General transcription factor IIH subunit 4

Gene

105627099

Organism
Atta cephalotes (Leafcutter ant)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Component of the core-TFIIH basal transcription factor involved in nucleotide excision repair (NER) of DNA.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processDNA damage, DNA repairUniRule annotation, Transcription, Transcription regulationUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
General transcription factor IIH subunit 4UniRule annotation
Gene namesi
Name:105627099Imported
OrganismiAtta cephalotes (Leafcutter ant)Imported
Taxonomic identifieri12957 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraHolometabolaHymenopteraApocritaAculeataVespoideaFormicidaeMyrmicinaeAtta
Proteomesi
  • UP000005205 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusUniRule annotation

Family & Domainsi

Sequence similaritiesi

Belongs to the TFB2 family.UniRule annotation

Phylogenomic databases

KOiK03144.
OMAiYLEQYAH.

Family and domain databases

InterProiView protein in InterPro
IPR004598. TFIIH_p52/Tfb2.
PANTHERiPTHR13152. PTHR13152. 1 hit.
PfamiView protein in Pfam
PF03849. Tfb2. 1 hit.
TIGRFAMsiTIGR00625. tfb2. 1 hit.

Sequencei

Sequence statusi: Complete.

A0A158P1W3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSTITGKNL LRPNSLQCTN LQEYLKSRSP DTLNKLYHKP PICLAVFREL
60 70 80 90 100
PVIAKHYVMR LLFVEQPVPQ AVIASWCSKL YFEEHQKVVQ VLNELYVWKE
110 120 130 140 150
ASIPGGLPGW TLNSTFKKNL KIVLLGGGKP WTMSNQLETD SKPRDVAFLD
160 170 180 190 200
SYALERWECV LHYMVGSQQQ EGISADAVRI LLHAGLMKRD EADGSPIITQ
210 220 230 240 250
AGFQFLLLDT ASQVWYFILQ YLDTIEARGL DLVECLTFLF QLNFSTLGKD
260 270 280 290 300
YSTEGMSEGL LTFLQHLREF GLVYQRKRKA GRFYPTRLAL NIATGETKPL
310 320 330 340 350
TRDTDKEGYI IVETNYRIYA YTNSNLQVAL LGLFCEMLYR FPNVVVSILT
360 370 380 390 400
RDSVRQALKS GITASQIVGY LRQHAHSKMI EAGPPILPPT IVDQIKLWEN
410 420 430 440 450
ERNRFLFSEG VLYSQFLSQT DFEVLRDHAV SIGVLIWQSE RKRTMVVTKA
460
GHDDVKKFWK RYSKGSS
Length:467
Mass (Da):53,385
Last modified:June 8, 2016 - v1
Checksum:i523DBA16C16B3E59
GO

Sequence databases

RefSeqiXP_012063771.1. XM_012208381.1.

Genome annotation databases

EnsemblMetazoaiXM_012208381.1; XP_012063771.1; LOC105627099.
GeneIDi105627099.
KEGGiacep:105627099.

Similar proteinsi

Entry informationi

Entry nameiA0A158P1W3_ATTCE
AccessioniPrimary (citable) accession number: A0A158P1W3
Entry historyiIntegrated into UniProtKB/TrEMBL: June 8, 2016
Last sequence update: June 8, 2016
Last modified: October 25, 2017
This is version 8 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported