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Protein
Submitted name:

Uncharacterized protein

Gene

Y1Q_0007239

Organism
Alligator mississippiensis (American alligator)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionIon channelUniRule annotationSAAS annotation
Biological processIon transport, Transport

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
ORF Names:Y1Q_0007239Imported
OrganismiAlligator mississippiensis (American alligator)Imported
Taxonomic identifieri8496 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaCrocodyliaAlligatoridaeAlligatorinaeAlligator
Proteomesi
  • UP000050525 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei294 – 318HelicalSequence analysisAdd BLAST25

Keywords - Cellular componenti

Cell junction, Cell membraneSAAS annotation, Membrane, SynapseSAAS annotation

PTM / Processingi

Keywords - PTMi

Disulfide bondSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini89 – 293Neur_chan_LBDInterPro annotationAdd BLAST205
Domaini301 – 331Neur_chan_membInterPro annotationAdd BLAST31

Sequence similaritiesi

Belongs to the ligand-gated ion channel (TC 1.A.9) family. [View classification]UniRule annotationSAAS annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Family and domain databases

Gene3Di1.20.58.390. 1 hit.
2.70.170.10. 1 hit.
InterProiView protein in InterPro
IPR006028. GABAA/Glycine_rcpt.
IPR005437. GABBAg_rcpt.
IPR006202. Neur_chan_lig-bd.
IPR036734. Neur_chan_lig-bd_sf.
IPR006201. Neur_channel.
IPR036719. Neuro-gated_channel_TM_sf.
IPR006029. Neurotrans-gated_channel_TM.
IPR018000. Neurotransmitter_ion_chnl_CS.
PANTHERiPTHR18945. PTHR18945. 1 hit.
PfamiView protein in Pfam
PF02931. Neur_chan_LBD. 1 hit.
PF02932. Neur_chan_memb. 1 hit.
PRINTSiPR00253. GABAARECEPTR.
PR01620. GABAARGAMMA.
PR00252. NRIONCHANNEL.
SUPFAMiSSF63712. SSF63712. 1 hit.
SSF90112. SSF90112. 1 hit.
PROSITEiView protein in PROSITE
PS00236. NEUROTR_ION_CHANNEL. 1 hit.

Sequencei

Sequence statusi: Complete.

A0A151NNS4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGAEQFGEQL LQLPTGFWSR VYTDKKQKHC TGEGAAFPRQ MSGKVLLMYL
60 70 80 90 100
TICPVLQIRS ESTEEYDYDY LSVNKTWVLT PKAQETDATQ ILNSLLKNYD
110 120 130 140 150
NKLRPDIGIK PTFIDVDIYV NSIGPVSVIQ MEYTIDIFFA QTWYDRRLRF
160 170 180 190 200
NSTLKALTLN TNMVSRIWIP DTFFRNSKRA DSHWITTPNQ LLRIWNDGKV
210 220 230 240 250
LYTLRLTIEA ECLLQLQNFP MDTHSCPLVF SSYGYPREEI IYRWRRYSIE
260 270 280 290 300
VSDQRTWRLY QFDFTGLRNT SEVLRTGAGE YMVMTVSFDL SRRMGYFAIQ
310 320 330 340
TYIPCILTVV LSWVSFWIKR DSTPARTSLG VLLRQTNESR CT
Length:342
Mass (Da):40,050
Last modified:June 8, 2016 - v1
Checksum:iFFDB941313CA1135
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AKHW03002528 Genomic DNA. Translation: KYO38115.1.

Similar proteinsi

Entry informationi

Entry nameiA0A151NNS4_ALLMI
AccessioniPrimary (citable) accession number: A0A151NNS4
Entry historyiIntegrated into UniProtKB/TrEMBL: June 8, 2016
Last sequence update: June 8, 2016
Last modified: October 25, 2017
This is version 5 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported