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Protein
Submitted name:

RNA-binding protein 43 isoform C

Gene

RBM43-1

Organism
Alligator mississippiensis (American alligator)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

GO - Molecular functioni

Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
RNA-binding protein 43 isoform CImported
Gene namesi
Name:RBM43-1Imported
ORF Names:Y1Q_0011621Imported
OrganismiAlligator mississippiensis (American alligator)Imported
Taxonomic identifieri8496 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaCrocodyliaAlligatoridaeAlligatorinaeAlligator
Proteomesi
  • UP000050525 Componenti: Unassembled WGS sequence

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini20 – 107RRMInterPro annotationAdd BLAST88

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili269 – 289Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Family and domain databases

Gene3Di3.30.70.330, 1 hit
InterProiView protein in InterPro
IPR009909 Nmi/IFP35_dom
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR034463 RBM43
IPR000504 RRM_dom
PANTHERiPTHR15225:SF8 PTHR15225:SF8, 1 hit
PfamiView protein in Pfam
PF07292 NID, 1 hit
SUPFAMiSSF54928 SSF54928, 1 hit
PROSITEiView protein in PROSITE
PS50102 RRM, 1 hit

Sequencei

Sequence statusi: Complete.

A0A151M0I1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKKSEGLQQ AAGEASKSER TVIVSGIPDG VLKDEVMADI LMIHFQRAKN
60 70 80 90 100
RGGDVEGVVY PTTTKGVAYI TFEDQKVTEK VLKKSEHQLE DKRLPRHYPL
110 120 130 140 150
KVSLYSQDVF SCISCVLDLS GFGDKYVLED LVQELQKNIT ALSFSPLQPN
160 170 180 190 200
GQISVQGSFP SIQSLKDNLL LKANSLSKTD KKAKCMSSQR SNSKTQKHGV
210 220 230 240 250
SVESKNNFIH NAVGEKQVVL DTDVYYYMKH ILHEDSLAKK SVVSREVTDG
260 270 280 290 300
EITILYLEKV NASSDPSKLE RAKKKIEDLS AELHSKLQKK RFHLDGSKHE
310 320 330 340 350
MQMYQHACKR VQPQYSQVLV IPYETHIDVI GSSSDIFGFA QEVKTKVKHY
360
LQKTPQEMIV R
Length:361
Mass (Da):40,646
Last modified:June 8, 2016 - v1
Checksum:iE76BC779E976B7B5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AKHW03006853 Genomic DNA Translation: KYO18018.1
RefSeqiXP_019336151.1, XM_019480606.1

Genome annotation databases

GeneIDi102559089

Similar proteinsi

Entry informationi

Entry nameiA0A151M0I1_ALLMI
AccessioniPrimary (citable) accession number: A0A151M0I1
Entry historyiIntegrated into UniProtKB/TrEMBL: June 8, 2016
Last sequence update: June 8, 2016
Last modified: February 28, 2018
This is version 12 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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