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Protein

RNA polymerase sigma factor RpoD

Gene

rpoD

Organism
Campylobacter jejuni HB-CJGB-LXC
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.SAAS annotation

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi580 – 599H-T-H motifUniRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingUniRule annotationSAAS annotation, Sigma factorUniRule annotationSAAS annotation
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma factor RpoDUniRule annotation
Alternative name(s):
Sigma-70UniRule annotation
Gene namesi
Name:rpoDUniRule annotation
ORF Names:K688_0029Imported
OrganismiCampylobacter jejuni HB-CJGB-LXCImported
Taxonomic identifieri1316918 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesCampylobacteraceaeCampylobacter

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

CytoplasmUniRule annotation

Interactioni

Subunit structurei

Interacts transiently with the RNA polymerase catalytic core.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliA0A0W8KQQ0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini409 – 422RNA_pol_sigma70InterPro annotationAdd BLAST14
Domaini579 – 605RNA_pol_sigma70InterPro annotationAdd BLAST27

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni385 – 455Sigma-70 factor domain-2UniRule annotationAdd BLAST71
Regioni464 – 540Sigma-70 factor domain-3UniRule annotationAdd BLAST77

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili62 – 82Sequence analysisAdd BLAST21
Coiled coili188 – 208Sequence analysisAdd BLAST21
Coiled coili305 – 325Sequence analysisAdd BLAST21
Coiled coili543 – 563Sequence analysisAdd BLAST21

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi409 – 412Interaction with polymerase core subunit RpoCUniRule annotation4

Keywords - Domaini

Coiled coilSequence analysis

Family and domain databases

Gene3Di1.10.10.10. 2 hits.
HAMAPiMF_00963. Sigma70_RpoD_SigA. 1 hit.
InterProiView protein in InterPro
IPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR009042. RNA_pol_sigma70_r1_2.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR012760. RNA_pol_sigma_RpoD_C.
IPR028630. Sigma70_RpoD.
IPR036388. WH-like_DNA-bd_sf.
PfamiView protein in Pfam
PF00140. Sigma70_r1_2. 1 hit.
PF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02393. RpoD_Cterm. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEiView protein in PROSITE
PS00715. SIGMA70_1. 1 hit.
PS00716. SIGMA70_2. 1 hit.

Sequencei

Sequence statusi: Complete.

A0A0W8KQQ0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNAKTQEAEL EELFQENAKD YITYEKLVKY LTKQPSASTA KKVQALMKKH
60 70 80 90 100
KVQLFSAAEI AQMKNIEDAK RLQEEKQKLQ DTSLENEFDL ANENDLLEWS
110 120 130 140 150
RSDSPVRMYL REMGQIALLN KDEEIEISKK IELGEDIIID AFCSVPYLID
160 170 180 190 200
FILDYKEPLI NRERRVKELF KSFDDEEKSD DKLDELDIDE DEENETELES
210 220 230 240 250
DEENTKKNSK KEDERTLKVI EKFKALEKAK KDWLKTSKDK ESGDELLDKL
260 270 280 290 300
SIAFKKNILK EKLMDLGPTS KLISEIVKSM ETALKSDEEF DKELKRLEYR
310 320 330 340 350
LPMFSDELKK RHADILKDIT KLSKEEITER ALETTMVSTY MEIKKLFQTK
360 370 380 390 400
EASEKSFDLE KSRLKEILEQ IKRGKKISDE AKGRMAKSNL RLVVSIAKRY
410 420 430 440 450
TNRGLPFLDL IQEGNIGLMK AVDKFEYKRG YKFSTYATWW IRQAISRAIA
460 470 480 490 500
DQARTIRIPI HMIETINQIN KIIREHLQKD GKEPDVSVIA KEVGLSVDKV
510 520 530 540 550
KQVIKITKEP ISLEAPIGNE DDGKFGDFVE DRNSLSPMDH ILKDDLKEQI
560 570 580 590 600
DEVLDQLNDR EKAVIRMRFG LMDDESDRTL EEIGKELNVT RERVRQIESS
610 620
AIKKLKHPKV GRKLKNYIEG WK
Length:622
Mass (Da):72,576
Last modified:March 16, 2016 - v1
Checksum:i365FAC56943C1FC5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
KQ950171 Genomic DNA. Translation: KUY32646.1.
RefSeqiWP_002853451.1. NZ_KQ950171.1.

Genome annotation databases

PATRICifig|1316918.3.peg.29.

Similar proteinsi

Entry informationi

Entry nameiA0A0W8KQQ0_CAMJU
AccessioniPrimary (citable) accession number: A0A0W8KQQ0
Entry historyiIntegrated into UniProtKB/TrEMBL: March 16, 2016
Last sequence update: March 16, 2016
Last modified: March 28, 2018
This is version 15 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

Lacks conserved residue(s) required for the propagation of feature annotation.UniRule annotation