Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Si:ch73-158p21.3

Gene

si:ch73-158p21.3

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Biological processi

Enzyme and pathway databases

ReactomeiR-DRE-2132295. MHC class II antigen presentation.

Names & Taxonomyi

Protein namesi
Submitted name:
Si:ch73-158p21.3Imported
Gene namesi
Name:si:ch73-158p21.3Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 4

Organism-specific databases

ZFINiZDB-GENE-030131-4747. si:ch73-158p21.3.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 19Sequence analysisAdd BLAST19
ChainiPRO_501403506720 – 249Sequence analysisAdd BLAST230

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000071675.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini111 – 192Ig-likeInterPro annotationAdd BLAST82

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

GeneTreeiENSGT00900000140849.
OMAiGETISCM.
PhylomeDBiA0A0R4IVW9.

Family and domain databases

Gene3Di2.60.40.10. 1 hit.
3.10.320.10. 1 hit.
InterProiView protein in InterPro
IPR007110. Ig-like_dom.
IPR036179. Ig-like_dom_sf.
IPR013783. Ig-like_fold.
IPR003597. Ig_C1-set.
IPR011162. MHC_I/II-like_Ag-recog.
IPR014745. MHC_II_a/b_N.
IPR000353. MHC_II_b_N.
PfamiView protein in Pfam
PF07654. C1-set. 1 hit.
PF00969. MHC_II_beta. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD000328. MHC_II_b_N. 1 hit.
SMARTiView protein in SMART
SM00407. IGc1. 1 hit.
SM00921. MHC_II_beta. 1 hit.
SUPFAMiSSF48726. SSF48726. 1 hit.
SSF54452. SSF54452. 1 hit.
PROSITEiView protein in PROSITE
PS50835. IG_LIKE. 1 hit.

Sequencei

Sequence statusi: Complete.

A0A0R4IVW9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSPANLLLML SVFTGAADGY YFSTWSQCIY SYPDLSDMVF ILSFNFNKWM
60 70 80 90 100
FLQFNSTVGI FVGYTEQGVK FAENFNKNEA YLQQLRAEVD IFCRHNAEIY
110 120 130 140 150
ESAVFDKAVM PKVNLSLVQK GDSRHPYLLR CSAYDFYPQQ IKMSWLRDGR
160 170 180 190 200
VVSDVTSSEQ MPNGDWYYQS HSELVFSPKS GETISCMVEH SSLTGPVVID
210 220 230 240
WKPPVHEFEW DFQLLSAAGD ASAVLGIIIA TAGYIYYKTK TEKNLVAIY
Length:249
Mass (Da):28,389
Last modified:January 20, 2016 - v1
Checksum:iE9A6B03F1A4277E6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FP074874 Genomic DNA. No translation available.
RefSeqiXP_005168179.1. XM_005168122.3.
UniGeneiDr.132659.
Dr.79881.

Genome annotation databases

EnsembliENSDART00000168831; ENSDARP00000138504; ENSDARG00000101030.
ENSDART00000174313; ENSDARP00000143185; ENSDARG00000101030.
GeneIDi326022.

Similar proteinsi

Entry informationi

Entry nameiA0A0R4IVW9_DANRE
AccessioniPrimary (citable) accession number: A0A0R4IVW9
Entry historyiIntegrated into UniProtKB/TrEMBL: January 20, 2016
Last sequence update: January 20, 2016
Last modified: March 28, 2018
This is version 21 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported