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Protein
Submitted name:

Protocadherin 11

Gene

pcdh11

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandCalciumSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Protocadherin 11Imported
Gene namesi
Name:pcdh11Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 14

Organism-specific databases

ZFINiZDB-GENE-140106-21. pcdh11.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei810 – 834HelicalSequence analysisAdd BLAST25

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 23Sequence analysisAdd BLAST23
ChainiPRO_500645169724 – 1036Sequence analysisAdd BLAST1013

Proteomic databases

PaxDbiA0A0R4ITD9.

Expressioni

Gene expression databases

ExpressionAtlasiA0A0R4ITD9. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000101477.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini161 – 247CAInterPro annotationAdd BLAST87
Domaini271 – 353CAInterPro annotationAdd BLAST83
Domaini383 – 464CAInterPro annotationAdd BLAST82
Domaini488 – 568CAInterPro annotationAdd BLAST81
Domaini592 – 671CAInterPro annotationAdd BLAST80
Domaini698 – 780CAInterPro annotationAdd BLAST83

Keywords - Domaini

RepeatSAAS annotation, SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Phylogenomic databases

GeneTreeiENSGT00890000139339.
OMAiCDSISKC.

Family and domain databases

InterProiView protein in InterPro
IPR002126. Cadherin.
IPR015919. Cadherin-like.
IPR020894. Cadherin_CS.
IPR013164. Cadherin_N.
IPR013585. Protocadherin.
PfamiView protein in Pfam
PF00028. Cadherin. 6 hits.
PF08266. Cadherin_2. 1 hit.
PF08374. Protocadherin. 1 hit.
PRINTSiPR00205. CADHERIN.
SMARTiView protein in SMART
SM00112. CA. 6 hits.
SUPFAMiSSF49313. SSF49313. 6 hits.
PROSITEiView protein in PROSITE
PS00232. CADHERIN_1. 4 hits.

Sequencei

Sequence statusi: Complete.

A0A0R4ITD9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDLASEAHVL VVLFTCLFLM CRAQEKDYTV KEEQPENVRI GNLRKDLNLN
60 70 80 90 100
LDPDIKLSSA LQFKPVYKTG DVPLVKVEAS TGEILTTANR IDREKLCSGV
110 120 130 140 150
FNEKRCYYEI EVAVLPDEIF RLVKIRFLIE DINDNAPLFQ STVINISIPE
160 170 180 190 200
NTAINSRYPV PSAFDPDIGI NGIQHYELVK SVSEFGLDII ETPEGDKWPQ
210 220 230 240 250
LIVQQSLDRE TKDTFVMKIK VEDGGNPPKS STAILQVTVS DVNDNRPVFK
260 270 280 290 300
DSEVEVNVPE NAPMGTSVTH LHATDADLGS NAQIHFSFSN QISPSTKRHF
310 320 330 340 350
AIDSTTGLIT VKQPLDREVN PVHKLIVLAS DGSSTPSRAT VIVNVTDIND
360 370 380 390 400
NVPSIDTRYI MNLVNGTVLL SENAPLNTKI ALITVTDRDS DLNGKVTCYT
410 420 430 440 450
DHDVPFRLKP VFNDQFLLET AAPLDYETTR EYAIRIVASD SGKPPLNTSA
460 470 480 490 500
MVLIKIKDEN DNVPVFPQPE IQLSIPENND PGTQLIKISA TDADSGSNAL
510 520 530 540 550
IIYSLGPDAP DGFNIDSRSG ILSVVKRLDR EKQEKYSFTV IARDNGTTPL
560 570 580 590 600
QSNVTVKLIV QDQNDNSPAF THPEYNFYVP ENLPLYGTVG LITVTDADAG
610 620 630 640 650
DNAVVTLSII NGKDNFIIDP KTGVIKPNIT FDREQQSSYT FVVKAVDAGL
660 670 680 690 700
MQTTSYAKVT INVVDVNDNR PVFVIPSSNY SYDLVPSNTS PGSVVTRVFA
710 720 730 740 750
IDNDTGMNAE LQYSIIGGSL RGLFTIDKTT GNITLQEKIV AADQGLHRLV
760 770 780 790 800
VKVKDLGQPE SLHAIALVHL FVNDTVSNAT FIQEQLRKSL ETPLERNIGD
810 820 830 840 850
NDVTPQTNGY VIVVIAIIAG TMTVILVIFV TALVRCRQTP RHKVVQKSKQ
860 870 880 890 900
SGEWVSPNQD GRQIKKKKKK KKRSPKSLLL NFVTIEETKS DDPTHEHVNG
910 920 930 940 950
TLDLPVELEE QTMGKYNWAT TPTTFKPDSP DLAKHYKSAS PQPTFQIKPE
960 970 980 990 1000
TPVAPKKHHV IQELPLDNTF VVGCDSLSKC SSSSSDPYSV SECSCQGGFK
1010 1020 1030
APGQIHTRQE TALKPPLYGT LCGTGTARSH RIKINL
Length:1,036
Mass (Da):114,144
Last modified:January 20, 2016 - v1
Checksum:i557E08212FE4EC80
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR812480 Genomic DNA. No translation available.
RefSeqiXP_017214613.1. XM_017359124.1.
UniGeneiDr.92079.

Genome annotation databases

EnsembliENSDART00000159727; ENSDARP00000137646; ENSDARG00000098652.
GeneIDi100333121.

Similar proteinsi

Entry informationi

Entry nameiA0A0R4ITD9_DANRE
AccessioniPrimary (citable) accession number: A0A0R4ITD9
Entry historyiIntegrated into UniProtKB/TrEMBL: January 20, 2016
Last sequence update: January 20, 2016
Last modified: January 31, 2018
This is version 17 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported