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Protein
Submitted name:

Vesicle-trafficking protein SEC22b-B

Gene

sec22bb

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Vesicle-trafficking protein SEC22b-BImported
Gene namesi
Name:sec22bbImported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 8

Organism-specific databases

ZFINiZDB-GENE-030131-5488. sec22bb.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei197 – 218HelicalSequence analysisAdd BLAST22

Keywords - Cellular componenti

Membrane

Expressioni

Gene expression databases

ExpressionAtlasiA0A0R4IQP5. baseline and differential.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini6 – 123LonginInterPro annotationAdd BLAST118
Domaini138 – 198V-SNARE coiled-coil homologyInterPro annotationAdd BLAST61

Sequence similaritiesi

Belongs to the synaptobrevin family.SAAS annotation

Keywords - Domaini

Coiled coilPROSITE-ProRule annotationSAAS annotation, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

GeneTreeiENSGT00510000046833.
OMAiMLCASVD.

Family and domain databases

InterProiView protein in InterPro
IPR011012. Longin-like_dom_sf.
IPR010908. Longin_dom.
IPR001388. Synaptobrevin.
PfamiView protein in Pfam
PF13774. Longin. 1 hit.
PF00957. Synaptobrevin. 1 hit.
SMARTiView protein in SMART
SM01270. Longin. 1 hit.
SUPFAMiSSF64356. SSF64356. 1 hit.
PROSITEiView protein in PROSITE
PS50859. LONGIN. 1 hit.
PS50892. V_SNARE. 1 hit.

Sequencei

Sequence statusi: Complete.

A0A0R4IQP5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVLLTMIARL ADGLPLAASM QEDEQFGPQM GRDLQQYQSQ AKQLFRKLNE
60 70 80 90 100
QSPNRCTLEA GSMSFHYVIE KGVCYLVLCE AGFPKKLAFA YLEDLQAEFH
110 120 130 140 150
EQHGKKVPTV SRPYSFIEFD TYIQKTKKSY IDSRARRNLS NINTELQDVQ
160 170 180 190 200
RIMVANIEEV LQRGEALSAL DSKASNLSSL SKKYRSDAKY LNTRSTYAKL
210
AAGGVFFIML IVYIRFWWL
Length:219
Mass (Da):25,119
Last modified:January 20, 2016 - v1
Checksum:i370E03B77B1B7FC8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CT573380 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENSDART00000158859; ENSDARP00000137821; ENSDARG00000100435.

Similar proteinsi

Entry informationi

Entry nameiA0A0R4IQP5_DANRE
AccessioniPrimary (citable) accession number: A0A0R4IQP5
Entry historyiIntegrated into UniProtKB/TrEMBL: January 20, 2016
Last sequence update: January 20, 2016
Last modified: November 22, 2017
This is version 18 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported