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Protein

Ribonuclease H

Gene

rnhA

Organism
Xanthomonas sp. Leaf148
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.UniRule annotationSAAS annotation

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

Catalytic activityi

Endonucleolytic cleavage to 5'-phosphomonoester.UniRule annotationSAAS annotation

Cofactori

Mg2+UniRule annotationNote: Binds 1 Mg2+ ion per subunit. May bind a second metal ion at a regulatory site, or after substrate binding.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi9Magnesium 1UniRule annotation1
Metal bindingi9Magnesium 2UniRule annotation1
Metal bindingi47Magnesium 1UniRule annotation1
Metal bindingi69Magnesium 1UniRule annotation1
Metal bindingi133Magnesium 2UniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionEndonucleaseUniRule annotationSAAS annotation, Hydrolase, Nuclease
LigandMagnesiumUniRule annotationSAAS annotation, Metal-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Ribonuclease HUniRule annotationSAAS annotation (EC:3.1.26.4UniRule annotationSAAS annotation)
Short name:
RNase HUniRule annotation
Gene namesi
Name:rnhAUniRule annotation
ORF Names:ASF90_03675Imported
OrganismiXanthomonas sp. Leaf148Imported
Taxonomic identifieri1736275 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
Proteomesi
  • UP000051471 Componenti: Unassembled WGS sequence

Subcellular locationi

  • Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Interactioni

Subunit structurei

Monomer.UniRule annotationSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 141RNase HInterPro annotationAdd BLAST141

Sequence similaritiesi

Belongs to the RNase H family.UniRule annotationSAAS annotation

Family and domain databases

CDDicd09278 RNase_HI_prokaryote_like, 1 hit
Gene3Di3.30.420.10, 1 hit
HAMAPiMF_00042 RNase_H, 1 hit
InterProiView protein in InterPro
IPR012337 RNaseH-like_sf
IPR002156 RNaseH_domain
IPR036397 RNaseH_sf
IPR022892 RNaseHI
PfamiView protein in Pfam
PF00075 RNase_H, 1 hit
SUPFAMiSSF53098 SSF53098, 1 hit
PROSITEiView protein in PROSITE
PS50879 RNASE_H, 1 hit

Sequencei

Sequence statusi: Complete.

A0A0Q5JFG3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKSIEVHTDG SCLGNPGPGG WAALLRYNGR EKELAGGETL STNNRMELMA
60 70 80 90 100
AIMALETLTE PCQIVLHTDS QYVRQGITEW MSGWVRRGWK TAGGDPVKNR
110 120 130 140 150
ELWERLHAAT QRHTIDWRWV KGHNGDPDNE RVDVLARHQA TIAQRGGAAT

A
Length:151
Mass (Da):16,798
Last modified:January 20, 2016 - v1
Checksum:i76AC122A2C2241C6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
LMOP01000001 Genomic DNA Translation: KQR18573.1
RefSeqiWP_055845957.1, NZ_LMOP01000001.1

Genome annotation databases

EnsemblBacteriaiKQR18573; KQR18573; ASF90_03675

Similar proteinsi

Entry informationi

Entry nameiA0A0Q5JFG3_9XANT
AccessioniPrimary (citable) accession number: A0A0Q5JFG3
Entry historyiIntegrated into UniProtKB/TrEMBL: January 20, 2016
Last sequence update: January 20, 2016
Last modified: March 28, 2018
This is version 16 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

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