Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

ATP-dependent RNA helicase RhlB

Gene

rhlB

Organism
Pectobacterium sp. (strain SCC3193)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

DEAD-box RNA helicase involved in RNA degradation. Has RNA-dependent ATPase activity and unwinds double-stranded RNA.UniRule annotationSAAS annotation

Catalytic activityi

ATP + H2O = ADP + phosphate.UniRule annotationSAAS annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionHelicaseUniRule annotationSAAS annotationImported, Hydrolase, RNA-bindingUniRule annotationSAAS annotation
LigandATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
ATP-dependent RNA helicase RhlBUniRule annotationSAAS annotation (EC:3.6.4.13UniRule annotationSAAS annotation)
Gene namesi
Name:rhlBUniRule annotation
Ordered Locus Names:W5S_4368Imported
OrganismiPectobacterium sp. (strain SCC3193)Imported
Taxonomic identifieri1166016 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesPectobacteriaceaePectobacterium
Proteomesi
  • UP000008044 Componenti: Chromosome

Subcellular locationi

A0A0H3IBF6:
  • Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Interactioni

Subunit structurei

Component of the RNA degradosome, which is a multiprotein complex involved in RNA processing and mRNA degradation.UniRule annotationSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini9 – 37Q_MOTIFInterPro annotationAdd BLAST29
Domaini40 – 219Helicase ATP-bindingInterPro annotationAdd BLAST180
Domaini245 – 390Helicase C-terminalInterPro annotationAdd BLAST146

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi9 – 37Q motifPROSITE-ProRule annotationAdd BLAST29

Sequence similaritiesi

Belongs to the DEAD box helicase family. RhlB subfamily.UniRule annotationSAAS annotation

Phylogenomic databases

KOiK03732.
OMAiDEMPVNA.

Family and domain databases

CDDicd00079. HELICc. 1 hit.
HAMAPiMF_00661. DEAD_helicase_RhlB. 1 hit.
InterProiView protein in InterPro
IPR011545. DEAD/DEAH_box_helicase_dom.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR000629. RNA-helicase_DEAD-box_CS.
IPR023554. RNA_helicase_ATP-dep_RhlB.
IPR014014. RNA_helicase_DEAD_Q_motif.
PfamiView protein in Pfam
PF00270. DEAD. 1 hit.
PF00271. Helicase_C. 1 hit.
SMARTiView protein in SMART
SM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
SUPFAMiSSF52540. SSF52540. 1 hit.
PROSITEiView protein in PROSITE
PS00039. DEAD_ATP_HELICASE. 1 hit.
PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
PS51195. Q_MOTIF. 1 hit.

Sequencei

Sequence statusi: Complete.

A0A0H3IBF6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKTHLTEQK FSDFALHPQV IEALESKGFH NCTPIQALAL PLALSGRDVA
60 70 80 90 100
GQAQTGTGKT LAFLASTFHY LLSHPANAER QTNQPRALIM APTRELAVQI
110 120 130 140 150
HSDAEALSHL TGLKLGLAYG GDGYDKQLKV LESGVDILVG TTGRLIDYAK
160 170 180 190 200
QNHINLGAIQ VVVLDEADRM YDLGFIKDIR WLFRRMPAAA QRLNMLFSAT
210 220 230 240 250
LSYRVRELAF EQMNNAEYVE VEPEQKTGHR IKEELFYPSN EEKMRLLQTL
260 270 280 290 300
LEEEWPDRCI IFANTKHRCE DVWGHLAADG HRVGLLTGDV AQKKRLRILE
310 320 330 340 350
EFTQGNLDIL VATDVAARGL HIPSVTHVFN YDLPDDCEDY VHRIGRTGRA
360 370 380 390 400
GQSGFSISLA CEEYALNLPA IETYIGHGIP VSKYNSDALM NDLPAPKRLT
410 420 430
RPPRSNNGPR RHSSAPRRSG APRNNRKRAD
Length:430
Mass (Da):48,062
Last modified:September 16, 2015 - v1
Checksum:i1D7D05612A4FE2D4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP003415 Genomic DNA. Translation: AFI92420.1.
RefSeqiWP_014701806.1. NC_017845.1.

Genome annotation databases

EnsemblBacteriaiAFI92420; AFI92420; W5S_4368.
KEGGipec:W5S_4368.
PATRICifig|1166016.3.peg.4448.

Similar proteinsi

Entry informationi

Entry nameiA0A0H3IBF6_PECSS
AccessioniPrimary (citable) accession number: A0A0H3IBF6
Entry historyiIntegrated into UniProtKB/TrEMBL: September 16, 2015
Last sequence update: September 16, 2015
Last modified: October 25, 2017
This is version 18 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported