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Protein
Submitted name:

SRY box 5

Gene

Sox5

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi472 – 540HMG boxPROSITE-ProRule annotationAdd BLAST69

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
SRY box 5Imported
Gene namesi
Name:Sox5Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 4

Organism-specific databases

RGDi620471 Sox5

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotation

PTM / Processingi

Proteomic databases

PaxDbiA0A0G2K6K9

Expressioni

Gene expression databases

BgeeiENSRNOG00000027869
ExpressionAtlasiA0A0G2K6K9 baseline

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000020729

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini472 – 540HMG boxInterPro annotationAdd BLAST69

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili160 – 180Sequence analysisAdd BLAST21
Coiled coili182 – 233Sequence analysisAdd BLAST52
Coiled coili369 – 396Sequence analysisAdd BLAST28
Coiled coili410 – 430Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

GeneTreeiENSGT00760000119274

Family and domain databases

Gene3Di1.10.30.10, 1 hit
InterProiView protein in InterPro
IPR009071 HMG_box_dom
IPR036910 HMG_box_dom_sf
PfamiView protein in Pfam
PF00505 HMG_box, 1 hit
SMARTiView protein in SMART
SM00398 HMG, 1 hit
SUPFAMiSSF47095 SSF47095, 1 hit
PROSITEiView protein in PROSITE
PS50118 HMG_BOX_2, 1 hit

Sequencei

Sequence statusi: Complete.

A0A0G2K6K9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLTDPDLPQE FERMSSKRPA SPYGETDGEV AMVTSRQKVE EEESERLPAF
60 70 80 90 100
HLPLHEVDGN KVMSSLAPYN SSTSPQKAEE GGRQSGESVS SAALGTPERR
110 120 130 140 150
KGSLADVVDT LKQRKMEELI KNEPEDTPSI EKLLSKDWKD KLLAMGSGNF
160 170 180 190 200
GEIKGTPESL AEKERQLMGM INQLTSLREQ LLAAHDEQKK LAASQIEKQR
210 220 230 240 250
QQMELAKQQQ EQIARQQQQL LQQQHKINLL QQQIQVQGQL PPLMIPVFPP
260 270 280 290 300
DQRTLAAAAQ QGFLLPPGFS YKAGCSDPYP VQLIPTTMAA AAAATPGLGP
310 320 330 340 350
LQLQDEVAQP LNLSAKPKTS DGKSPASPTS PHMPALRINS GAGPLKASVP
360 370 380 390 400
AALASPSARV STIGYLNDHD AVTKAIQEAR QMKEQLRREQ QALDGKVAVV
410 420 430 440 450
NSIGISNCRT EKEKTTLESL TQQLAVKQNE EGKFSHGMMD FNMSGDSDGS
460 470 480 490 500
AGVSESRIYR ESRGRGSNEP HIKRPMNAFM VWAKDERRKI LQAFPDMHNS
510 520 530 540 550
NISKILGSRW KAMTNLEKQP YYEEQARLSK QHLEKYPDYK YKPRPKRTCL
560 570 580 590 600
VDGKKLRIGE YKAIMRNRRQ EMRQYFNVGQ QAQIPIATAG VVYPGAIAMA
610 620 630 640 650
GMPSPHLPSE HSSVSSSPEP GMPVIQSTYG VKGEEPHIKE EIQAEDINGE
660 670
IYEEYEEEEE DPDVDYGSDS ENHIAGQAN
Length:679
Mass (Da):75,221
Last modified:July 22, 2015 - v1
Checksum:i5E715C3F48DB9D17
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07062459 Genomic DNA No translation available.
AABR07062460 Genomic DNA No translation available.
AABR07062461 Genomic DNA No translation available.
AABR07062462 Genomic DNA No translation available.
AABR07062463 Genomic DNA No translation available.
AABR07062464 Genomic DNA No translation available.
AABR07073087 Genomic DNA No translation available.
AC121477 Genomic DNA No translation available.
RefSeqiXP_017447897.1, XM_017592408.1
UniGeneiRn.205065
Rn.208914

Genome annotation databases

EnsembliENSRNOT00000087434; ENSRNOP00000073853; ENSRNOG00000027869
GeneIDi140587

Similar proteinsi

Entry informationi

Entry nameiA0A0G2K6K9_RAT
AccessioniPrimary (citable) accession number: A0A0G2K6K9
Entry historyiIntegrated into UniProtKB/TrEMBL: July 22, 2015
Last sequence update: July 22, 2015
Last modified: March 28, 2018
This is version 20 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
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Main funding by: National Institutes of Health