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Protein

Putative HTH-type transcriptional regulatory protein EO93_00540

Gene

EO93_00540

Organism
Methanosarcina sp. 1.H.A.2.2
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingUniRule annotation
Biological processTranscription, Transcription regulationUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Putative HTH-type transcriptional regulatory protein EO93_00540UniRule annotation
Gene namesi
ORF Names:EO93_00540Imported
OrganismiMethanosarcina sp. 1.H.A.2.2Imported
Taxonomic identifieri1483601 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanomicrobiaMethanosarcinalesMethanosarcinaceaeMethanosarcina
Proteomesi
  • UP000034377 Componenti: Unassembled WGS sequence

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini132 – 190HTH cro/C1-typeInterPro annotationAdd BLAST59

Phylogenomic databases

OrthoDBiPOG093Z05RI

Family and domain databases

CDDicd00093 HTH_XRE, 1 hit
HAMAPiMF_00584 HTH_type_cro_C1, 1 hit
InterProiView protein in InterPro
IPR001387 Cro/C1-type_HTH
IPR010982 Lambda_DNA-bd_dom_sf
IPR020886 Tscrpt_reg_HTH_Cro/C1
PfamiView protein in Pfam
PF01381 HTH_3, 1 hit
SMARTiView protein in SMART
SM00530 HTH_XRE, 1 hit
SUPFAMiSSF47413 SSF47413, 1 hit
PROSITEiView protein in PROSITE
PS50943 HTH_CROC1, 1 hit

Sequencei

Sequence statusi: Complete.

A0A0F8P4C4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTKEVLIHQI IDVLSRAGFA LSDRCNIRPR SFDVAARKYE TLLLCKVLFN
60 70 80 90 100
IDGLNEETAR EMKYLAEYLG GSAIVVGAKT RDQMLEDSVV YMRYDILALN
110 120 130 140 150
VQTLHDYFVE NIPPLVSAAP GGLYVAIEGD LLRKSRTDQS MSLGTLASMV
160 170 180 190 200
GVSRRTISKY EEEGMDASID VVLQLEDIFG IELARPIDIL KSCGSRKPRK
210 220 230 240 250
KAEPEKEEPQ VKHNVLLPED LILNTISMLG YDVLPTAQAP FKAISRDKSS
260 270 280 290 300
VILTGVSEFN TTVIKRAHLM SSISCITETQ SVFIINGHSK LKSVENTVLI
310 320
EKKELDKISD SQELLEFIEE RKEPQSEG
Length:328
Mass (Da):36,624
Last modified:July 22, 2015 - v1
Checksum:i7B1DB2229798E12D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
JJQL01000055 Genomic DNA Translation: KKH48045.1
RefSeqiWP_048161970.1, NZ_JJQL01000055.1

Genome annotation databases

EnsemblBacteriaiKKH48045; KKH48045; EO93_00540
PATRICifig|1483601.3.peg.114

Similar proteinsi

Entry informationi

Entry nameiA0A0F8P4C4_9EURY
AccessioniPrimary (citable) accession number: A0A0F8P4C4
Entry historyiIntegrated into UniProtKB/TrEMBL: July 22, 2015
Last sequence update: July 22, 2015
Last modified: January 31, 2018
This is version 17 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported