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Protein

Tubulin beta chain

Gene
N/A
Organism
Oryza glumipatula
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandGTP-bindingUniRule annotationSAAS annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Tubulin beta chainUniRule annotation
OrganismiOryza glumipatulaImported
Taxonomic identifieri40148 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryza
Proteomesi
  • UP000026961 Componenti: Chromosome 1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

MicrotubuleUniRule annotationSAAS annotation

Interactioni

Subunit structurei

Dimer of alpha and beta chains. A typical microtubule is a hollow water-filled tube with an outer diameter of 25 nm and an inner diameter of 15 nM. Alpha-beta heterodimers associate head-to-tail to form protofilaments running lengthwise along the microtubule wall with the beta-tubulin subunit facing the microtubule plus end conferring a structural polarity. Microtubules usually have 13 protofilaments but different protofilament numbers can be found in some organisms and specialized cells.UniRule annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 179TubulinInterPro annotationAdd BLAST179
Domaini181 – 318Tubulin_CInterPro annotationAdd BLAST138

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili343 – 377Sequence analysisAdd BLAST35

Sequence similaritiesi

Belongs to the tubulin family.UniRule annotationSAAS annotation

Keywords - Domaini

Coiled coilSequence analysis

Family and domain databases

Gene3Di1.10.287.600, 1 hit
3.30.1330.20, 1 hit
3.40.50.1440, 1 hit
InterProiView protein in InterPro
IPR002453 Beta_tubulin
IPR008280 Tub_FtsZ_C
IPR000217 Tubulin
IPR018316 Tubulin/FtsZ_2-layer-sand-dom
IPR037103 Tubulin/FtsZ_C_sf
IPR036525 Tubulin/FtsZ_GTPase_sf
IPR023123 Tubulin_C
IPR017975 Tubulin_CS
IPR003008 Tubulin_FtsZ_GTPase
PANTHERiPTHR11588 PTHR11588, 1 hit
PTHR11588:SF256 PTHR11588:SF256, 1 hit
PfamiView protein in Pfam
PF00091 Tubulin, 1 hit
PF03953 Tubulin_C, 1 hit
PRINTSiPR01163 BETATUBULIN
PR01161 TUBULIN
SMARTiView protein in SMART
SM00864 Tubulin, 1 hit
SM00865 Tubulin_C, 1 hit
SUPFAMiSSF52490 SSF52490, 1 hit
SSF55307 SSF55307, 1 hit
PROSITEiView protein in PROSITE
PS00227 TUBULIN, 1 hit

Sequencei

Sequence statusi: Complete.

A0A0D9Y6V4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDLEPGTMDS VRTGPYGQIF RPDNFVFGQS GAGNNWAKGH YTEGAELIDS
60 70 80 90 100
VLDVVRKEAE NCDCLQGFQV CHSLGGGTGS GMGTLLISKI REEYPDRMML
110 120 130 140 150
TFSVFPSPKV SDTVVEPYNA TLSVHQLVEN ADECMVLDNE ALYDICFRTL
160 170 180 190 200
KLTTPSFGDL NHLISATMSG VTCCLRFPGQ LNSDLRKLAV NLIPFPRLHF
210 220 230 240 250
FMVGFAPLTS RGSQQYRALT VPELTQQMWD AKNMMCAADP RHGRYLTASA
260 270 280 290 300
MFRGKMSTKE VDEQMINVQN KNSSYFVEWI PNNVKSSVCD IPPRGLSMAS
310 320 330 340 350
TFIGNSTSIQ EMFRRVSEQF TAMFRRKAFL HWYTGEGMDE MEFTEAESNM
360 370 380
NDLVSEYQQY QDATADEEGD YEDEEEQVPE DE
Length:382
Mass (Da):42,990
Last modified:May 27, 2015 - v1
Checksum:iFFB93B05F5BAE8B2
GO

Genome annotation databases

EnsemblPlantsiOGLUM01G13070.1; OGLUM01G13070.1; OGLUM01G13070
GrameneiOGLUM01G13070.1; OGLUM01G13070.1; OGLUM01G13070

Similar proteinsi

Entry informationi

Entry nameiA0A0D9Y6V4_9ORYZ
AccessioniPrimary (citable) accession number: A0A0D9Y6V4
Entry historyiIntegrated into UniProtKB/TrEMBL: May 27, 2015
Last sequence update: May 27, 2015
Last modified: June 20, 2018
This is version 22 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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