Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Auxin response factor

Gene
N/A
Organism
Leersia perrieri
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).UniRule annotation

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi142 – 244TF-B3PROSITE-ProRule annotationAdd BLAST103

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processAuxin signaling pathwayUniRule annotationSAAS annotation, Transcription, Transcription regulationPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Auxin response factorUniRule annotation
OrganismiLeersia perrieriImported
Taxonomic identifieri77586 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeLeersia
Proteomesi
  • UP000032180 Componenti: Chromosome 12

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Interactioni

Subunit structurei

Homodimers and heterodimers.UniRule annotationSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini142 – 244TF-B3InterPro annotationAdd BLAST103
Domaini707 – 790PB1InterPro annotationAdd BLAST84

Sequence similaritiesi

Belongs to the ARF family.UniRule annotation

Family and domain databases

CDDicd10017. B3_DNA. 1 hit.
Gene3Di2.40.330.10. 1 hit.
InterProiView protein in InterPro
IPR033389. AUX/IAA_dom.
IPR010525. Auxin_resp.
IPR003340. B3_DNA-bd.
IPR015300. DNA-bd_pseudobarrel_sf.
IPR000270. PB1_dom.
PfamiView protein in Pfam
PF02309. AUX_IAA. 1 hit.
PF06507. Auxin_resp. 1 hit.
PF02362. B3. 1 hit.
SMARTiView protein in SMART
SM01019. B3. 1 hit.
SUPFAMiSSF101936. SSF101936. 1 hit.
PROSITEiView protein in PROSITE
PS50863. B3. 1 hit.
PS51745. PB1. 1 hit.

Sequencei

Sequence statusi: Complete.

A0A0D9XZA5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAAATAVDG LAAAGEGGGG GVDGLFVELW RACAGPLVNV PAVGERVFYL
60 70 80 90 100
PQGHIEQVEA STNQVAEQQG TPLYNLPWKI PCKVMNVELK AEPDTDEVYA
110 120 130 140 150
QLTLLPEKQQ DGNGNANASK DQGEEEEVVP PSATERPRVH SFCKTLTASD
160 170 180 190 200
TSTHGGFSVL RRHADECLPP LDMSQHPPTQ ELVAKDLHGV EWRFRHIFRG
210 220 230 240 250
QPRRHLLQSG WSVFVSAKRL VAGDAFIFLR GENGELRVGV RRAMRQQANI
260 270 280 290 300
PSSVISSHSM HLGVLATAWH AVNTGTMFTV YYKPRTSPSE FVVPRDLYEE
310 320 330 340 350
SLKRNHSIGM RFKMTFEGEE AAEQRFTGTI VGIGDSDPSG WADSKWRSLK
360 370 380 390 400
VRWDETASVP RPDRVSPWQI EPANSPSPVN PLPAPRTKRA RPNVISSSSD
410 420 430 440 450
LSAVNKEVAS KVIANSQQNV LPRVFHSQEN TNLRSRFGDS NELNTSQKLT
460 470 480 490 500
MWSSGSNQQK NNAAVQRELG SQGWMSIRRP DGSTELLSGF QPLKDTRNPL
510 520 530 540 550
SSFPGQISGN RSNTWNTINV HYPDQNVNHN MFPGTWPFMP QDTGFGVNQQ
560 570 580 590 600
SYLMAPDTTL PQRSLNAKFG GNGAFTSLRA HGIDQRSSGW LGHIEPSSHI
610 620 630 640 650
DDASSSLIKP QPLVIDHNVQ KTKGSSCMLF GISLDSPAKP EQLISPPSVA
660 670 680 690 700
FDGKPQQDAL EEDECSDPSK SVKPLDGAQH DSAMEKHQSC PEGARNIQSK
710 720 730 740 750
QQNGSSRSCK KVHKQGIALG RSIDLTKFTC YDELIAELDR MFDFNGELNS
760 770 780 790 800
CKNWMVVYTD NEGDMMLVGD DPWNEFCNMV HKIFIYTREE VQKMNPGALN
810 820 830
SRSEDSRSTS VERGLAGEGV QGGISTPSLN SENC
Length:834
Mass (Da):91,754
Last modified:May 27, 2015 - v1
Checksum:i11B6D17684194972
GO

Genome annotation databases

EnsemblPlantsiLPERR12G09930.1; LPERR12G09930.1; LPERR12G09930.
GrameneiLPERR12G09930.1; LPERR12G09930.1; LPERR12G09930.

Similar proteinsi

Entry informationi

Entry nameiA0A0D9XZA5_9ORYZ
AccessioniPrimary (citable) accession number: A0A0D9XZA5
Entry historyiIntegrated into UniProtKB/TrEMBL: May 27, 2015
Last sequence update: May 27, 2015
Last modified: November 22, 2017
This is version 17 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported