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Protein

Auxin response factor

Gene
N/A
Organism
Leersia perrieri
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).UniRule annotation

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi93 – 195TF-B3PROSITE-ProRule annotationAdd BLAST103

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation
Biological processAuxin signaling pathwayUniRule annotationSAAS annotation, Transcription, Transcription regulationPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Auxin response factorUniRule annotation
OrganismiLeersia perrieriImported
Taxonomic identifieri77586 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeLeersia
Proteomesi
  • UP000032180 Componenti: Chromosome 11

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Interactioni

Subunit structurei

Homodimers and heterodimers.UniRule annotationSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini93 – 195TF-B3InterPro annotationAdd BLAST103
Domaini669 – 753PB1InterPro annotationAdd BLAST85

Sequence similaritiesi

Belongs to the ARF family.UniRule annotation

Family and domain databases

CDDicd10017. B3_DNA. 1 hit.
Gene3Di2.40.330.10. 1 hit.
InterProiView protein in InterPro
IPR033389. AUX/IAA_dom.
IPR010525. Auxin_resp.
IPR003340. B3_DNA-bd.
IPR015300. DNA-bd_pseudobarrel_sf.
IPR000270. PB1_dom.
PfamiView protein in Pfam
PF02309. AUX_IAA. 1 hit.
PF06507. Auxin_resp. 1 hit.
PF02362. B3. 1 hit.
SMARTiView protein in SMART
SM01019. B3. 1 hit.
SUPFAMiSSF101936. SSF101936. 1 hit.
PROSITEiView protein in PROSITE
PS50863. B3. 1 hit.
PS51745. PB1. 1 hit.

Sequencei

Sequence statusi: Complete.

A0A0D9XSI1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVTAEVEAAA AAAAGVEAST NQVSEQRMQL YNLPWKIPCE VMNVELKAEP
60 70 80 90 100
DTDEVYAQLT LLPESKQQEE NGCTEEEAPT APATHVRPRV HSFCKTLTAS
110 120 130 140 150
DTSTHGGFSV LRRHADECLP PLDMSRQPPT QELVAKDLHG VEWRFRHIFR
160 170 180 190 200
GQPRRHLLQS GWSVFVSAKR LVAGDAFIFL RGENGELRVG VRRAMRQQTN
210 220 230 240 250
VPSSVISSHS MHLGVLATAW HAVNTGTMFT VYYKPRTSPA EFVVPYDRYM
260 270 280 290 300
ESLKRNYSIG MRFKMRFEGE EAPEQRFTGT IVGMGDSDPA GWPESKWRSL
310 320 330 340 350
KVRWDEASSI PRPERVSPWQ IEPAVNPPPI NPLPVPRTKR LRPNVTASPP
360 370 380 390 400
DPSAVAKEAA PKVTVESEPN GMQRAFQTQE NAAPKGSFGN SSELDTAQKS
410 420 430 440 450
VMRSSGFDRE KNNISTQRKL GSDGWMQMNR PENYSEMLSG FQPPKDVQTP
460 470 480 490 500
QGFCSLPDQI TPGHSNFWHT VNAQYQDQQG NHNMFPSSWS FMPPNTGLGL
510 520 530 540 550
NKQNYSMIQE VGGLSQRAMN TKFGNGVYAA QPGRGIEQYS GAWFGHMIPS
560 570 580 590 600
SHMDDTQPRL IKPKPLVVAH GDVQKAKGAS CKLFGIHLDS PVKSELLKSP
610 620 630 640 650
SSVVYDGTPQ TPGVEWRRQD VNEVEKCSDP SKTLKSLDAP QADSVPEKPL
660 670 680 690 700
SCQQASRNMP CKSQGGSTRS CKKVHKQGIA LGRSVDLTKF DGYEGLIAEL
710 720 730 740 750
DDMFDFTGEL KGPNKEWMVV YTDNEGDMML VGDDPWIEFC DMVHKIFIYT
760 770 780 790
REEVQRMNPG TLNSRSEDSH ANSVERGSVA REMRGCVSTS SLNSENC
Length:797
Mass (Da):88,652
Last modified:May 27, 2015 - v1
Checksum:iF144B720B3567A0F
GO

Genome annotation databases

EnsemblPlantsiLPERR11G11950.4; LPERR11G11950.4; LPERR11G11950.
GrameneiLPERR11G11950.4; LPERR11G11950.4; LPERR11G11950.

Similar proteinsi

Entry informationi

Entry nameiA0A0D9XSI1_9ORYZ
AccessioniPrimary (citable) accession number: A0A0D9XSI1
Entry historyiIntegrated into UniProtKB/TrEMBL: May 27, 2015
Last sequence update: May 27, 2015
Last modified: March 28, 2018
This is version 19 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported