DNA-directed RNA polymerase subunit beta

Functionⁱ

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotation

Catalytic activityⁱ

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

GO - Molecular functionⁱ

DNA binding Source: InterPro
DNA-directed 5'-3' RNA polymerase activity Source: UniProtKB-KW
ribonucleoside binding Source: InterPro

View the complete GO annotation on QuickGO ...

GO - Biological processⁱ

transcription, DNA-templated Source: InterPro

View the complete GO annotation on QuickGO ...

Keywordsⁱ

Molecular function	NucleotidyltransferaseUniRule annotation, Transferase
Biological process	Transcription

Names & Taxonomyⁱ

Protein namesⁱ	Recommended name: DNA-directed RNA polymerase subunit betaUniRule annotation (EC:2.7.7.6UniRule annotation)
Organismⁱ	Leersia perrieriImported
Taxonomic identifierⁱ	77586 [NCBI]
Taxonomic lineageⁱ	cellular organisms › Eukaryota › Viridiplantae › Streptophyta › Streptophytina › Embryophyta › Tracheophyta › Euphyllophyta › Spermatophyta › Magnoliophyta › Mesangiospermae › Liliopsida › Petrosaviidae › commelinids › Poales › Poaceae › BOP clade › Oryzoideae › Oryzeae › Oryzinae › Leersia
Proteomesⁱ	UP000032180 Componentⁱ: Chromosome 1

Subcellular locationⁱ

Keywords - Cellular componentⁱ

DNA-directed RNA polymeraseUniRule annotation

Family & Domainsⁱ

Domains and Repeats

Feature key	Position(s)	DescriptionActions	Length
Domainⁱ	100 – 404	RNA_pol_Rpb2_1InterPro annotationAdd BLAST	305
Domainⁱ	224 – 355	RNA_pol_Rpb2_2InterPro annotationAdd BLAST	132
Domainⁱ	430 – 494	RNA_pol_Rpb2_3InterPro annotationAdd BLAST	65
Domainⁱ	531 – 576	RNA_pol_Rpb2_4InterPro annotationAdd BLAST	46
Domainⁱ	578 – 599	RNA_pol_Rpb2_5InterPro annotationAdd BLAST	22
Domainⁱ	600 – 944	RNA_pol_Rpb2_6InterPro annotationAdd BLAST	345
Domainⁱ	946 – 1036	RNA_pol_Rpb2_7InterPro annotationAdd BLAST	91

Sequence similaritiesⁱ

Belongs to the RNA polymerase beta chain family.UniRule annotation

Family and domain databases

Conserved Domains Database More...CDDⁱ	cd00653. RNA_pol_B_RPB2. 1 hit.
Gene3Dⁱ	2.40.270.10. 2 hits. 2.40.50.150. 2 hits.
InterProⁱ	View protein in InterPro IPR015712. DNA-dir_RNA_pol_su2. IPR007120. DNA-dir_RNAP_su2_dom. IPR037033. DNA-dir_RNAP_su2_hyb_sf. IPR007121. RNA_pol_bsu_CS. IPR007644. RNA_pol_bsu_protrusion. IPR007642. RNA_pol_Rpb2_2. IPR007645. RNA_pol_Rpb2_3. IPR007646. RNA_pol_Rpb2_4. IPR007647. RNA_pol_Rpb2_5. IPR007641. RNA_pol_Rpb2_7. IPR014724. RNA_pol_RPB2_OB-fold.
PANTHERⁱ	PTHR20856. PTHR20856. 4 hits.
Pfam protein domain database More...Pfamⁱ	View protein in Pfam PF04563. RNA_pol_Rpb2_1. 1 hit. PF04561. RNA_pol_Rpb2_2. 1 hit. PF04565. RNA_pol_Rpb2_3. 1 hit. PF04566. RNA_pol_Rpb2_4. 1 hit. PF04567. RNA_pol_Rpb2_5. 1 hit. PF00562. RNA_pol_Rpb2_6. 1 hit. PF04560. RNA_pol_Rpb2_7. 1 hit.
PROSITEⁱ	View protein in PROSITE PS01166. RNA_POL_BETA. 1 hit.

Sequenceⁱ

Sequence statusⁱ: Complete.

A0A0D9V0X8-1 [UniParc]FASTA Add to basket

« Hide

        10         20         30         40         50
MAWASNGPEN ESFRQLISNT HAFLSLKKKK SNTTPSPPPL PIPSAAMAIA 
        60         70         80         90        100
AAADDGGDGE GAKEAPPPPP PSPTYRSLAA PVANPVDKFA LLPAFLKVRG 
       110        120        130        140        150
LVKEHIDSFN YFITKGIRIV VQANNRIEYK NVKVGQPSVK FEYNVEKITP 
       160        170        180        190        200
QFCRLTDCTY SAPVMVDIEY TVGKHYELKM KQDFIIGYLP IMLKSHACVL 
       210        220        230        240        250
SRKDEAELAR YGECPLDPGG YFIVKGTEKI PIIVVMKAMG IESDQEVVQM 
       260        270        280        290        300
VGRDPRYGDL LYPSIQECAF ERIYTQEQAL QYMDDKVMYP GTGTQKEGRS 
       310        320        330        340        350
KSILRDVFVA HVLVNSGNFR PKCIYTTVMI RRMMDAILNA DTFDDKDYVG 
       360        370        380        390        400
NKRLELSGQL ISLLFEDLFK TMNSNAVERL NHSSGKLHSS PLDLSQYINE 
       410        420        430        440        450
EIITHGLERA ISTGNWDIKR FRMHRKGVSQ VLSRLSYMAS LGYMTRITPH 
       460        470        480        490        500
FEKNRKTSGP RALQPSQWGM LCPCDTPEGE ACGLTKNLSL LTHVTTDQEE 
       510        520        530        540        550
GPLMNLCYSL GVEDLSLLSG EEIHAPGSFF VMFNGLILGK HRRPQRFANT 
       560        570        580        590        600
MRKLRRSGNI GEFVSIFVNE KQDGIRSFDD FLRDGLIEYL DVNEENNALL 
       610        620        630        640        650
SRADSLLYLL VYAQRPLLTT KTIELVGYDK LGAGQNATVA IMSYSGYDIE 
       660        670        680        690        700
DAIVMNKSSL DRGFGRCIAM KKYTVTKEKY ENGWSDRIVM PQRDKNGSLL 
       710        720        730        740        750
KHNMQALDED GFAAPGVIIR NHDIYVNKQT PKNTTKQCGA RPTDMDYKDS 
       760        770        780        790        800
PAVYKGDDGE TTVVDRVMLC SDTNDKLIIK CIIRHTRRPE VGDKFSSRHG 
       810        820        830        840        850
QKGVCGTIVQ QEDFPFSESG ICPDLIMNPH GFPSRMTIGK MIELLGGKAG 
       860        870        880        890        900
VSCGQFHYGS AFGEPSGNAD KVEDISYTLV KHGFSYNGKD FLYSGILGHP 
       910        920        930        940        950
CQAYIFMGPI YYQKLKHMVL DKMHARASGP RVLLTRQPTE GRSRDGGLRL 
       960        970        980        990       1000
GEMERDCLIA YGASMLIFER LLISSDPYQV QVCRNCGLLG YYNHRLKASY 
      1010       1020       1030       1040
CSMCKNGENM AKMKMPYACK LLFQELQAMN IVPRLKLTEG

Length:1,040

Mass (Da):116,493

Last modified:May 27, 2015 - v1

Checksum:ⁱD89854AD0C16A480

GO

Genome annotation databases

EnsemblPlantsⁱ	LPERR01G13780.9; LPERR01G13780.9; LPERR01G13780.
Grameneⁱ	LPERR01G13780.9; LPERR01G13780.9; LPERR01G13780.

Protein	Similar proteins	Organisms	Length	Cluster ID	Cluster name	Size
A0A0D9V0X8	A0A0D9V0W9	Leersia perrieri	1,040	UniRef90_A0A0D9V0X8	Cluster: DNA-directed RNA polymerase subunit beta	2

Protein	Similar proteins	Organisms	Length	Cluster ID	Cluster name	Size
A0A0D9V0X8	B8AR02 B9F8X6 A0A0D9V0W9 A0A0E0GNY0 A0A0E0NWA9 A0A0D3FJL3 A0A0E0NWB0 A0A087SEY2 A0A0E0GNX9 A0A0D3FJL2 +12	Oryza sativa subsp. indica (Rice) Oryza sativa subsp. japonica (Rice) Leersia perrieri Oryza nivara (Indian wild rice) Oryza rufipogon (Brownbeard rice) (Asian wild rice) Oryza barthii Auxenochlorella protothecoides (Green microalga) (Chlorella protothecoides) Oryza punctata (Red rice) Spinacia oleracea (Spinach) Oryza meridionalis And more	1,117	UniRef50_B8AR02	Cluster: DNA-directed RNA polymerase subunit beta	23

Cross-referencesⁱ

3D structure databases

ModBaseⁱ	Search...
MobiDBⁱ	Search...

Protocols and materials databases

Structural Biology Knowledgebase	Search...

Structural Biology Knowledgebase

Search...

Genome annotation databases

EnsemblPlantsⁱ	LPERR01G13780.9; LPERR01G13780.9; LPERR01G13780.
Grameneⁱ	LPERR01G13780.9; LPERR01G13780.9; LPERR01G13780.

Family and domain databases

Conserved Domains Database More...CDDⁱ	cd00653. RNA_pol_B_RPB2. 1 hit.
Gene3Dⁱ	2.40.270.10. 2 hits. 2.40.50.150. 2 hits.
InterProⁱ	View protein in InterPro IPR015712. DNA-dir_RNA_pol_su2. IPR007120. DNA-dir_RNAP_su2_dom. IPR037033. DNA-dir_RNAP_su2_hyb_sf. IPR007121. RNA_pol_bsu_CS. IPR007644. RNA_pol_bsu_protrusion. IPR007642. RNA_pol_Rpb2_2. IPR007645. RNA_pol_Rpb2_3. IPR007646. RNA_pol_Rpb2_4. IPR007647. RNA_pol_Rpb2_5. IPR007641. RNA_pol_Rpb2_7. IPR014724. RNA_pol_RPB2_OB-fold.
PANTHERⁱ	PTHR20856. PTHR20856. 4 hits.
Pfam protein domain database More...Pfamⁱ	View protein in Pfam PF04563. RNA_pol_Rpb2_1. 1 hit. PF04561. RNA_pol_Rpb2_2. 1 hit. PF04565. RNA_pol_Rpb2_3. 1 hit. PF04566. RNA_pol_Rpb2_4. 1 hit. PF04567. RNA_pol_Rpb2_5. 1 hit. PF00562. RNA_pol_Rpb2_6. 1 hit. PF04560. RNA_pol_Rpb2_7. 1 hit.
PROSITEⁱ	View protein in PROSITE PS01166. RNA_POL_BETA. 1 hit.
ProtoNetⁱ	Search...

Entry informationⁱ

Entry nameⁱ	A0A0D9V0X8_9ORYZ
Accessionⁱ	A0A0D9V0X8Primary (citable) accession number: A0A0D9V0X8
Entry historyⁱ	Integrated into UniProtKB/TrEMBL:	May 27, 2015
	Last sequence update:	May 27, 2015
	Last modified:	February 28, 2018
	This is version 20 of the entry and version 1 of the sequence. See complete history.
Entry statusⁱ	Unreviewed (UniProtKB/TrEMBL)

Miscellaneousⁱ

Keywords - Technical termⁱ

Complete proteome, Reference proteomeImported

UniProtKB - A0A0D9V0X8 (A0A0D9V0X8_9ORYZ)

Your basket is currently empty. ⁱ

DNA-directed RNA polymerase subunit beta

Select a section on the left to see content.

Functionⁱ

Catalytic activityⁱ

GO - Molecular functionⁱ

GO - Biological processⁱ

Keywordsⁱ

Names & Taxonomyⁱ

Subcellular locationⁱ

Keywords - Cellular componentⁱ

Family & Domainsⁱ

Domains and Repeats

Sequence similaritiesⁱ

Family and domain databases

Sequenceⁱ

Genome annotation databases

Similar proteinsⁱ

Cross-referencesⁱ

3D structure databases

Protocols and materials databases

Genome annotation databases

Family and domain databases

Entry informationⁱ

Miscellaneousⁱ

Keywords - Technical termⁱ

UniProtKB

UniParc

Help

UniRef

Proteomes

Annotation systems

Supporting data

UniProtKB - A0A0D9V0X8 (A0A0D9V0X8_9ORYZ)

Your basket is currently empty. i <p>When browsing through different UniProt proteins, you can use the ‘basket’ to save them, so that you can back to find or analyse them later.<p><a href='/help/basket' target='_top'>More...</a></p>

DNA-directed RNA polymerase subunit beta

Select a section on the left to see content.

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Family and domain databases

Genome annotation databases

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

3D structure databases

Protocols and materials databases

Genome annotation databases

Family and domain databases

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Your basket is currently empty. ⁱ

Functionⁱ

GO - Molecular functionⁱ

GO - Biological processⁱ

Names & Taxonomyⁱ

Subcellular locationⁱ

Family & Domainsⁱ

Sequence similaritiesⁱ

Cross-referencesⁱ

Entry informationⁱ

Miscellaneousⁱ