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Protein

DNA-directed RNA polymerase subunit beta

Gene
N/A
Organism
Leersia perrieri
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionNucleotidyltransferaseUniRule annotation, Transferase
Biological processTranscription

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit betaUniRule annotation (EC:2.7.7.6UniRule annotation)
OrganismiLeersia perrieriImported
Taxonomic identifieri77586 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeLeersia
Proteomesi
  • UP000032180 Componenti: Chromosome 1

Subcellular locationi

    Keywords - Cellular componenti

    DNA-directed RNA polymeraseUniRule annotation

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    Domaini100 – 404RNA_pol_Rpb2_1InterPro annotationAdd BLAST305
    Domaini224 – 355RNA_pol_Rpb2_2InterPro annotationAdd BLAST132
    Domaini430 – 494RNA_pol_Rpb2_3InterPro annotationAdd BLAST65
    Domaini531 – 576RNA_pol_Rpb2_4InterPro annotationAdd BLAST46
    Domaini578 – 599RNA_pol_Rpb2_5InterPro annotationAdd BLAST22
    Domaini600 – 944RNA_pol_Rpb2_6InterPro annotationAdd BLAST345
    Domaini946 – 1036RNA_pol_Rpb2_7InterPro annotationAdd BLAST91

    Sequence similaritiesi

    Belongs to the RNA polymerase beta chain family.UniRule annotation

    Family and domain databases

    CDDicd00653. RNA_pol_B_RPB2. 1 hit.
    Gene3Di2.40.270.10. 1 hit.
    InterProiView protein in InterPro
    IPR015712. DNA-dir_RNA_pol_su2.
    IPR007120. DNA-dir_RNAP_su2_dom.
    IPR037033. DNA-dir_RNAP_su2_hyb_sf.
    IPR007121. RNA_pol_bsu_CS.
    IPR007644. RNA_pol_bsu_protrusion.
    IPR007642. RNA_pol_Rpb2_2.
    IPR007645. RNA_pol_Rpb2_3.
    IPR007646. RNA_pol_Rpb2_4.
    IPR007647. RNA_pol_Rpb2_5.
    IPR007641. RNA_pol_Rpb2_7.
    PANTHERiPTHR20856. PTHR20856. 4 hits.
    PfamiView protein in Pfam
    PF04563. RNA_pol_Rpb2_1. 1 hit.
    PF04561. RNA_pol_Rpb2_2. 1 hit.
    PF04565. RNA_pol_Rpb2_3. 1 hit.
    PF04566. RNA_pol_Rpb2_4. 1 hit.
    PF04567. RNA_pol_Rpb2_5. 1 hit.
    PF00562. RNA_pol_Rpb2_6. 1 hit.
    PF04560. RNA_pol_Rpb2_7. 1 hit.
    PROSITEiView protein in PROSITE
    PS01166. RNA_POL_BETA. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A0A0D9V0X8-1 [UniParc]FASTAAdd to basket

    « Hide

            10         20         30         40         50
    MAWASNGPEN ESFRQLISNT HAFLSLKKKK SNTTPSPPPL PIPSAAMAIA
    60 70 80 90 100
    AAADDGGDGE GAKEAPPPPP PSPTYRSLAA PVANPVDKFA LLPAFLKVRG
    110 120 130 140 150
    LVKEHIDSFN YFITKGIRIV VQANNRIEYK NVKVGQPSVK FEYNVEKITP
    160 170 180 190 200
    QFCRLTDCTY SAPVMVDIEY TVGKHYELKM KQDFIIGYLP IMLKSHACVL
    210 220 230 240 250
    SRKDEAELAR YGECPLDPGG YFIVKGTEKI PIIVVMKAMG IESDQEVVQM
    260 270 280 290 300
    VGRDPRYGDL LYPSIQECAF ERIYTQEQAL QYMDDKVMYP GTGTQKEGRS
    310 320 330 340 350
    KSILRDVFVA HVLVNSGNFR PKCIYTTVMI RRMMDAILNA DTFDDKDYVG
    360 370 380 390 400
    NKRLELSGQL ISLLFEDLFK TMNSNAVERL NHSSGKLHSS PLDLSQYINE
    410 420 430 440 450
    EIITHGLERA ISTGNWDIKR FRMHRKGVSQ VLSRLSYMAS LGYMTRITPH
    460 470 480 490 500
    FEKNRKTSGP RALQPSQWGM LCPCDTPEGE ACGLTKNLSL LTHVTTDQEE
    510 520 530 540 550
    GPLMNLCYSL GVEDLSLLSG EEIHAPGSFF VMFNGLILGK HRRPQRFANT
    560 570 580 590 600
    MRKLRRSGNI GEFVSIFVNE KQDGIRSFDD FLRDGLIEYL DVNEENNALL
    610 620 630 640 650
    SRADSLLYLL VYAQRPLLTT KTIELVGYDK LGAGQNATVA IMSYSGYDIE
    660 670 680 690 700
    DAIVMNKSSL DRGFGRCIAM KKYTVTKEKY ENGWSDRIVM PQRDKNGSLL
    710 720 730 740 750
    KHNMQALDED GFAAPGVIIR NHDIYVNKQT PKNTTKQCGA RPTDMDYKDS
    760 770 780 790 800
    PAVYKGDDGE TTVVDRVMLC SDTNDKLIIK CIIRHTRRPE VGDKFSSRHG
    810 820 830 840 850
    QKGVCGTIVQ QEDFPFSESG ICPDLIMNPH GFPSRMTIGK MIELLGGKAG
    860 870 880 890 900
    VSCGQFHYGS AFGEPSGNAD KVEDISYTLV KHGFSYNGKD FLYSGILGHP
    910 920 930 940 950
    CQAYIFMGPI YYQKLKHMVL DKMHARASGP RVLLTRQPTE GRSRDGGLRL
    960 970 980 990 1000
    GEMERDCLIA YGASMLIFER LLISSDPYQV QVCRNCGLLG YYNHRLKASY
    1010 1020 1030 1040
    CSMCKNGENM AKMKMPYACK LLFQELQAMN IVPRLKLTEG
    Length:1,040
    Mass (Da):116,493
    Last modified:May 27, 2015 - v1
    Checksum:iD89854AD0C16A480
    GO

    Genome annotation databases

    EnsemblPlantsiLPERR01G13780.9; LPERR01G13780.9; LPERR01G13780.
    GrameneiLPERR01G13780.9; LPERR01G13780.9; LPERR01G13780.

    Similar proteinsi

    Entry informationi

    Entry nameiA0A0D9V0X8_9ORYZ
    AccessioniPrimary (citable) accession number: A0A0D9V0X8
    Entry historyiIntegrated into UniProtKB/TrEMBL: May 27, 2015
    Last sequence update: May 27, 2015
    Last modified: November 22, 2017
    This is version 18 of the entry and version 1 of the sequence. See complete history.
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported