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Protein

DNA-directed RNA polymerase subunit beta

Gene
N/A
Organism
Leersia perrieri
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionNucleotidyltransferaseUniRule annotation, Transferase
Biological processTranscription

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit betaUniRule annotation (EC:2.7.7.6UniRule annotation)
OrganismiLeersia perrieriImported
Taxonomic identifieri77586 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeLeersia
Proteomesi
  • UP000032180 Componenti: Chromosome 1

Subcellular locationi

    Keywords - Cellular componenti

    DNA-directed RNA polymeraseUniRule annotation

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    Domaini49 – 402RNA_pol_Rpb2_1InterPro annotationAdd BLAST354
    Domaini180 – 353RNA_pol_Rpb2_2InterPro annotationAdd BLAST174
    Domaini428 – 492RNA_pol_Rpb2_3InterPro annotationAdd BLAST65
    Domaini529 – 574RNA_pol_Rpb2_4InterPro annotationAdd BLAST46
    Domaini576 – 597RNA_pol_Rpb2_5InterPro annotationAdd BLAST22
    Domaini598 – 942RNA_pol_Rpb2_6InterPro annotationAdd BLAST345
    Domaini944 – 1034RNA_pol_Rpb2_7InterPro annotationAdd BLAST91

    Sequence similaritiesi

    Belongs to the RNA polymerase beta chain family.UniRule annotation

    Family and domain databases

    CDDicd00653. RNA_pol_B_RPB2. 1 hit.
    Gene3Di2.40.270.10. 2 hits.
    2.40.50.150. 2 hits.
    3.90.1110.10. 1 hit.
    InterProiView protein in InterPro
    IPR015712. DNA-dir_RNA_pol_su2.
    IPR007120. DNA-dir_RNAP_su2_dom.
    IPR037033. DNA-dir_RNAP_su2_hyb_sf.
    IPR007121. RNA_pol_bsu_CS.
    IPR007644. RNA_pol_bsu_protrusion.
    IPR007642. RNA_pol_Rpb2_2.
    IPR037034. RNA_pol_Rpb2_2_sf.
    IPR007645. RNA_pol_Rpb2_3.
    IPR007646. RNA_pol_Rpb2_4.
    IPR007647. RNA_pol_Rpb2_5.
    IPR007641. RNA_pol_Rpb2_7.
    IPR014724. RNA_pol_RPB2_OB-fold.
    PANTHERiPTHR20856. PTHR20856. 3 hits.
    PfamiView protein in Pfam
    PF04563. RNA_pol_Rpb2_1. 1 hit.
    PF04561. RNA_pol_Rpb2_2. 1 hit.
    PF04565. RNA_pol_Rpb2_3. 1 hit.
    PF04566. RNA_pol_Rpb2_4. 1 hit.
    PF04567. RNA_pol_Rpb2_5. 1 hit.
    PF00562. RNA_pol_Rpb2_6. 1 hit.
    PF04560. RNA_pol_Rpb2_7. 1 hit.
    PROSITEiView protein in PROSITE
    PS01166. RNA_POL_BETA. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A0A0D9V0X5-1 [UniParc]FASTAAdd to basket

    « Hide

            10         20         30         40         50
    MAIAAAADDG AKEAPPPPPP SPTYRSLAAP VANPVDKFAL LPAFLKVRGL
    60 70 80 90 100
    VKEHIDSFNY FITKGIRIVV QANNRIEYKN VKVGQPSVKF EYNVEKITPQ
    110 120 130 140 150
    YSAPVMVDIE YTVGKHYELK MKQDFIIGYL PIMLKSHACV LSRKDEAELA
    160 170 180 190 200
    RYGECPLDPG GYFIVKGTEK VILMQEQLSK NRIIIDTDSK GRIIASVTSS
    210 220 230 240 250
    THEVKSKTVI FMDKEKIYLQ LNQFTKPIPI IVVMKAMGIE SDQEVVQMVG
    260 270 280 290 300
    RDPRYGDLLY PSIQECAFER IYTQEQALQY MDDKVMYPGT GTQKEGRSKS
    310 320 330 340 350
    ILRDVFVAHV LVNSGNFRPK CIYTTVMIRR MMDAILNADT FDDKDYVGNK
    360 370 380 390 400
    RLELSGQLIS LLFEDLFKTM NSNAVERLNH SSGKLHSSPL DLSQYINEEI
    410 420 430 440 450
    ITHGLERAIS TGNWDIKRFR MHRKGVSQVL SRLSYMASLG YMTRITPHFE
    460 470 480 490 500
    KNRKTSGPRA LQPSQWGMLC PCDTPEGEAC GLTKNLSLLT HVTTDQEEGP
    510 520 530 540 550
    LMNLCYSLGV EDLSLLSGEE IHAPGSFFVM FNGLILGKHR RPQRFANTMR
    560 570 580 590 600
    KLRRSGNIGE FVSIFVNEKQ DGIRSFDDFL RDGLIEYLDV NEENNALLSR
    610 620 630 640 650
    ADSLLYLLVY AQRPLLTTKT IELVGYDKLG AGQNATVAIM SYSGYDIEDA
    660 670 680 690 700
    IVMNKSSLDR GFGRCIAMKK YTVTKEKYEN GWSDRIVMPQ RDKNGSLLKH
    710 720 730 740 750
    NMQALDEDGF AAPGVIIRNH DIYVNKQTPK NTTKQCGARP TDMDYKDSPA
    760 770 780 790 800
    VYKGDDGETT VVDRVMLCSD TNDKLIIKCI IRHTRRPEVG DKFSSRHGQK
    810 820 830 840 850
    GVCGTIVQQE DFPFSESGIC PDLIMNPHGF PSRMTIGKMI ELLGGKAGVS
    860 870 880 890 900
    CGQFHYGSAF GEPSGNADKV EDISYTLVKH GFSYNGKDFL YSGILGHPCQ
    910 920 930 940 950
    AYIFMGPIYY QKLKHMVLDK MHARASGPRV LLTRQPTEGR SRDGGLRLGE
    960 970 980 990 1000
    MERDCLIAYG ASMLIFERLL ISSDPYQVQV CRNCGLLGYY NHRLKASYCS
    1010 1020 1030
    MCKNGENMAK MKMPYACKLL FQELQAMNIV PRLKLTEG
    Length:1,038
    Mass (Da):116,741
    Last modified:May 27, 2015 - v1
    Checksum:iAFB6ADE8EE436C86
    GO

    Genome annotation databases

    EnsemblPlantsiLPERR01G13780.6; LPERR01G13780.6; LPERR01G13780.
    GrameneiLPERR01G13780.6; LPERR01G13780.6; LPERR01G13780.

    Similar proteinsi

    Entry informationi

    Entry nameiA0A0D9V0X5_9ORYZ
    AccessioniPrimary (citable) accession number: A0A0D9V0X5
    Entry historyiIntegrated into UniProtKB/TrEMBL: May 27, 2015
    Last sequence update: May 27, 2015
    Last modified: February 28, 2018
    This is version 20 of the entry and version 1 of the sequence. See complete history.
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported