Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

DNA-directed RNA polymerase subunit beta

Gene
N/A
Organism
Leersia perrieri
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionNucleotidyltransferaseUniRule annotation, Transferase
Biological processTranscription

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit betaUniRule annotation (EC:2.7.7.6UniRule annotation)
OrganismiLeersia perrieriImported
Taxonomic identifieri77586 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeLeersia
Proteomesi
  • UP000032180 Componenti: Chromosome 1

Subcellular locationi

    Keywords - Cellular componenti

    DNA-directed RNA polymeraseUniRule annotation

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    Domaini49 – 410RNA_pol_Rpb2_1InterPro annotationAdd BLAST362
    Domaini188 – 361RNA_pol_Rpb2_2InterPro annotationAdd BLAST174
    Domaini436 – 500RNA_pol_Rpb2_3InterPro annotationAdd BLAST65
    Domaini537 – 582RNA_pol_Rpb2_4InterPro annotationAdd BLAST46
    Domaini584 – 605RNA_pol_Rpb2_5InterPro annotationAdd BLAST22
    Domaini606 – 950RNA_pol_Rpb2_6InterPro annotationAdd BLAST345
    Domaini952 – 1042RNA_pol_Rpb2_7InterPro annotationAdd BLAST91

    Sequence similaritiesi

    Belongs to the RNA polymerase beta chain family.UniRule annotation

    Family and domain databases

    CDDicd00653. RNA_pol_B_RPB2. 1 hit.
    Gene3Di2.40.270.10. 2 hits.
    2.40.50.150. 2 hits.
    3.90.1110.10. 1 hit.
    InterProiView protein in InterPro
    IPR015712. DNA-dir_RNA_pol_su2.
    IPR007120. DNA-dir_RNAP_su2_dom.
    IPR037033. DNA-dir_RNAP_su2_hyb_sf.
    IPR007121. RNA_pol_bsu_CS.
    IPR007644. RNA_pol_bsu_protrusion.
    IPR007642. RNA_pol_Rpb2_2.
    IPR037034. RNA_pol_Rpb2_2_sf.
    IPR007645. RNA_pol_Rpb2_3.
    IPR007646. RNA_pol_Rpb2_4.
    IPR007647. RNA_pol_Rpb2_5.
    IPR007641. RNA_pol_Rpb2_7.
    IPR014724. RNA_pol_RPB2_OB-fold.
    PANTHERiPTHR20856. PTHR20856. 3 hits.
    PfamiView protein in Pfam
    PF04563. RNA_pol_Rpb2_1. 1 hit.
    PF04561. RNA_pol_Rpb2_2. 1 hit.
    PF04565. RNA_pol_Rpb2_3. 1 hit.
    PF04566. RNA_pol_Rpb2_4. 1 hit.
    PF04567. RNA_pol_Rpb2_5. 1 hit.
    PF00562. RNA_pol_Rpb2_6. 1 hit.
    PF04560. RNA_pol_Rpb2_7. 1 hit.
    PROSITEiView protein in PROSITE
    PS01166. RNA_POL_BETA. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A0A0D9V0X4-1 [UniParc]FASTAAdd to basket

    « Hide

            10         20         30         40         50
    MAIAAAADDG AKEAPPPPPP SPTYRSLAAP VANPVDKFAL LPAFLKVRGL
    60 70 80 90 100
    VKEHIDSFNY FITKGIRIVV QANNRIEYKN VKVGQPSVKF EYNVEKITPQ
    110 120 130 140 150
    FCRLTDCTYS APVMVDIEYT VGKHYELKMK QDFIIGYLPI MLKSHACVLS
    160 170 180 190 200
    RKDEAELARY GECPLDPGGY FIVKGTEKVI LMQEQLSKNR IIIDTDSKGR
    210 220 230 240 250
    IIASVTSSTH EVKSKTVIFM DKEKIYLQLN QFTKPIPIIV VMKAMGIESD
    260 270 280 290 300
    QEVVQMVGRD PRYGDLLYPS IQECAFERIY TQEQALQYMD DKVMYPGTGT
    310 320 330 340 350
    QKEGRSKSIL RDVFVAHVLV NSGNFRPKCI YTTVMIRRMM DAILNADTFD
    360 370 380 390 400
    DKDYVGNKRL ELSGQLISLL FEDLFKTMNS NAVERLNHSS GKLHSSPLDL
    410 420 430 440 450
    SQYINEEIIT HGLERAISTG NWDIKRFRMH RKGVSQVLSR LSYMASLGYM
    460 470 480 490 500
    TRITPHFEKN RKTSGPRALQ PSQWGMLCPC DTPEGEACGL TKNLSLLTHV
    510 520 530 540 550
    TTDQEEGPLM NLCYSLGVED LSLLSGEEIH APGSFFVMFN GLILGKHRRP
    560 570 580 590 600
    QRFANTMRKL RRSGNIGEFV SIFVNEKQDG IRSFDDFLRD GLIEYLDVNE
    610 620 630 640 650
    ENNALLSRAD SLLYLLVYAQ RPLLTTKTIE LVGYDKLGAG QNATVAIMSY
    660 670 680 690 700
    SGYDIEDAIV MNKSSLDRGF GRCIAMKKYT VTKEKYENGW SDRIVMPQRD
    710 720 730 740 750
    KNGSLLKHNM QALDEDGFAA PGVIIRNHDI YVNKQTPKNT TKQCGARPTD
    760 770 780 790 800
    MDYKDSPAVY KGDDGETTVV DRVMLCSDTN DKLIIKCIIR HTRRPEVGDK
    810 820 830 840 850
    FSSRHGQKGV CGTIVQQEDF PFSESGICPD LIMNPHGFPS RMTIGKMIEL
    860 870 880 890 900
    LGGKAGVSCG QFHYGSAFGE PSGNADKVED ISYTLVKHGF SYNGKDFLYS
    910 920 930 940 950
    GILGHPCQAY IFMGPIYYQK LKHMVLDKMH ARASGPRVLL TRQPTEGRSR
    960 970 980 990 1000
    DGGLRLGEME RDCLIAYGAS MLIFERLLIS SDPYQVQVCR NCGLLGYYNH
    1010 1020 1030 1040
    RLKASYCSMC KNGENMAKMK MPYACKLLFQ ELQAMNIVPR LKLTEG
    Length:1,046
    Mass (Da):117,681
    Last modified:May 27, 2015 - v1
    Checksum:i6159B3686A0EE074
    GO

    Genome annotation databases

    EnsemblPlantsiLPERR01G13780.5; LPERR01G13780.5; LPERR01G13780.
    GrameneiLPERR01G13780.5; LPERR01G13780.5; LPERR01G13780.

    Similar proteinsi

    Entry informationi

    Entry nameiA0A0D9V0X4_9ORYZ
    AccessioniPrimary (citable) accession number: A0A0D9V0X4
    Entry historyiIntegrated into UniProtKB/TrEMBL: May 27, 2015
    Last sequence update: May 27, 2015
    Last modified: February 28, 2018
    This is version 20 of the entry and version 1 of the sequence. See complete history.
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported