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Protein

RNA helicase

Gene
N/A
Organism
Leersia perrieri
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + H2O = ADP + phosphate.SAAS annotation

GO - Molecular functioni

Keywordsi

Molecular functionHelicaseUniRule annotationSAAS annotation, Hydrolase, RNA-bindingSAAS annotation
LigandATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
RNA helicaseSAAS annotation (EC:3.6.4.13SAAS annotation)
OrganismiLeersia perrieriImported
Taxonomic identifieri77586 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeLeersia
Proteomesi
  • UP000032180 Componenti: Chromosome 1

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini24 – 52Q_MOTIFInterPro annotationAdd BLAST29
Domaini55 – 233Helicase ATP-bindingInterPro annotationAdd BLAST179
Domaini275 – 431Helicase C-terminalInterPro annotationAdd BLAST157

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili512 – 532Sequence analysisAdd BLAST21
Coiled coili558 – 578Sequence analysisAdd BLAST21

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi24 – 52Q motifPROSITE-ProRule annotationAdd BLAST29

Sequence similaritiesi

Belongs to the DEAD box helicase family.UniRule annotationSAAS annotation

Keywords - Domaini

Coiled coilSequence analysis

Family and domain databases

CDDicd00079 HELICc, 1 hit
InterProiView protein in InterPro
IPR011545 DEAD/DEAH_box_helicase_dom
IPR025313 DUF4217
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR000629 RNA-helicase_DEAD-box_CS
IPR014014 RNA_helicase_DEAD_Q_motif
PfamiView protein in Pfam
PF00270 DEAD, 1 hit
PF13959 DUF4217, 1 hit
PF00271 Helicase_C, 1 hit
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SM01178 DUF4217, 1 hit
SM00490 HELICc, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
PROSITEiView protein in PROSITE
PS00039 DEAD_ATP_HELICASE, 1 hit
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS51195 Q_MOTIF, 1 hit

Sequencei

Sequence statusi: Complete.

A0A0D9UX41-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSFSSSSSMA AAAARKRALT EQRFSELSPA LSPEVVKALK SGGFRRCTPV
60 70 80 90 100
QAAAIPLLLS HKDVAVDAAT GSGKTLSFVV PVVEILRRRP SPPRPHEVLG
110 120 130 140 150
IIISPTRELS SQIYNVAQPF FATLKGVSSM LLVGGFDIKA ELKKLEEEGA
160 170 180 190 200
NILVGTPGKL FDVMERLDTL NFKNLEILIL DEADRLLDLG FQKQITSIIS
210 220 230 240 250
KLPKLRRTGL FSATQTEAVK ELAKAGLRNP VRVEVKTEAK APSKDGARQE
260 270 280 290 300
LGPSKTPLGL RLEYMICEPS NKSSQLVDFL VQNTGKKIMV YFATCACVDY
310 320 330 340 350
WAIVLPLLDS LKGSPIIPYH GKMKQGPREK ALASFSALSS GILVCTDVAA
360 370 380 390 400
RGLDIPHVDL IVQYDPPQDP NVFIHRAGRT ARYDQEGDAI VFLLPKEDTY
410 420 430 440 450
VEFLKRRGVP LTERESSTNA VDIVPQIRSA ALEDRNVMEK GLTAFVSFVR
460 470 480 490 500
AYKEHHCSYI FSWKDLEIGR LAMEYGLLQV PSMPEVKHHS LSLEGFTPVN
510 520 530 540 550
DVDVTKVKYK DKAREKQRQK TLKRKAEELA QRPERDRRKA PEKPEKPKRK
560 570 580 590 600
KTGKQRQAVQ TKEDMDELTH EYRLLKKLKR GVIDEDEYEK LTGFGESDDG
610 620 630 640
DSSDGGDSEL DERKERGNKV LKKVKQKGKS KGSRKFEGRN KQKTRRR
Length:647
Mass (Da):72,335
Last modified:May 27, 2015 - v1
Checksum:i3774F602D25DA557
GO

Genome annotation databases

EnsemblPlantsiLPERR01G03720.1; LPERR01G03720.1; LPERR01G03720
GrameneiLPERR01G03720.1; LPERR01G03720.1; LPERR01G03720

Similar proteinsi

Entry informationi

Entry nameiA0A0D9UX41_9ORYZ
AccessioniPrimary (citable) accession number: A0A0D9UX41
Entry historyiIntegrated into UniProtKB/TrEMBL: May 27, 2015
Last sequence update: May 27, 2015
Last modified: December 20, 2017
This is version 18 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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