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Protein

Tyrosine recombinase XerD

Gene

xerD

Organism
Rickettsia monacensis
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei145UniRule annotation1
Active sitei176UniRule annotation1
Active sitei251UniRule annotation1
Active sitei254UniRule annotation1
Active sitei277UniRule annotation1
Active sitei286O-(3'-phospho-DNA)-tyrosine intermediateUniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingUniRule annotationSAAS annotation
Biological processCell cycle, Cell divisionUniRule annotationSAAS annotation, Chromosome partitionUniRule annotationSAAS annotation, DNA integrationUniRule annotationSAAS annotation, DNA recombinationUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Tyrosine recombinase XerDUniRule annotation
Gene namesi
Name:xerDUniRule annotationImported
ORF Names:RMONA_05380Imported
OrganismiRickettsia monacensisImported
Taxonomic identifieri109232 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesRickettsiaceaeRickettsieaeRickettsiaspotted fever group
Proteomesi
  • UP000018149 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotationSAAS annotation

GO - Cellular componenti

Keywords - Cellular componenti

CytoplasmUniRule annotationSAAS annotation

Interactioni

Subunit structurei

Forms a cyclic heterotetrameric complex composed of two molecules of XerC and two molecules of XerD.UniRule annotationSAAS annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini4 – 85Integrase_SAM-like_NInterPro annotationAdd BLAST82
Domaini109 – 290Phage_integraseInterPro annotationAdd BLAST182

Phylogenomic databases

KOiK04763.

Family and domain databases

Gene3Di1.10.150.130. 1 hit.
1.10.443.10. 1 hit.
HAMAPiMF_01808. Recomb_XerC_XerD. 1 hit.
MF_01807. Recomb_XerD. 1 hit.
InterProiView protein in InterPro
IPR011010. DNA_brk_join_enz.
IPR013762. Integrase-like_cat_sf.
IPR002104. Integrase_catalytic.
IPR010998. Integrase_recombinase_N.
IPR004107. Integrase_SAM-like_N.
IPR011932. Recomb_XerD.
IPR023009. Tyrosine_recombinase_XerC/XerD.
PfamiView protein in Pfam
PF02899. Phage_int_SAM_1. 1 hit.
PF00589. Phage_integrase. 1 hit.
SUPFAMiSSF56349. SSF56349. 1 hit.
TIGRFAMsiTIGR02225. recomb_XerD. 1 hit.

Sequencei

Sequence statusi: Complete.

A0A0B7IZU8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEFISQFLEM LLAERALSKN SILSYKRDLF DFQNYLAKQK LSELNITTEN
60 70 80 90 100
VRDWIEYLAT NDLQARSINR KISTIKSYYE FLISENHTAF NPVLNVDLPK
110 120 130 140 150
YQNKLPEILS IDQIKSLLEH CSQDNSPEGI RLNAMIHLLY ASGLRVSELV
160 170 180 190 200
SLKLADILTN KTSKGEIRKI FSVLGKGNKE RVIVINEQAV ISIAKYLAII
210 220 230 240 250
DVFVNKAKPE NLIYLFPSSA LAGYMTRQNF AILLKSAALY AGLNPEHISP
260 270 280 290 300
HILRHSFASH LLEGGADLRV IQELLGHADI STTQIYTHLQ TNHLKKALLH

HPLNKN
Length:306
Mass (Da):34,749
Last modified:April 1, 2015 - v1
Checksum:iD48736E43662C30E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
LN794217 Genomic DNA. Translation: CEO17452.1.
RefSeqiWP_023507865.1. NZ_LN794217.1.

Genome annotation databases

EnsemblBacteriaiCEO17452; CEO17452; RMONA_05380.
KEGGirmc:RMONA_05380.

Similar proteinsi

Entry informationi

Entry nameiA0A0B7IZU8_9RICK
AccessioniPrimary (citable) accession number: A0A0B7IZU8
Entry historyiIntegrated into UniProtKB/TrEMBL: April 1, 2015
Last sequence update: April 1, 2015
Last modified: November 22, 2017
This is version 22 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported