xerD

Functionⁱ

Sites

Feature key	Position(s)	DescriptionActions	Length
Active siteⁱ	145	UniRule annotation	1
Active siteⁱ	176	UniRule annotation	1
Active siteⁱ	251	UniRule annotation	1
Active siteⁱ	254	UniRule annotation	1
Active siteⁱ	277	UniRule annotation	1
Active siteⁱ	286	O-(3'-phospho-DNA)-tyrosine intermediateUniRule annotation	1

GO - Molecular functionⁱ

DNA binding Source: UniProtKB-KW
tyrosine-based site-specific recombinase activity Source: UniProtKB-UniRule

View the complete GO annotation on QuickGO ...

GO - Biological processⁱ

cell cycle Source: UniProtKB-KW
cell division Source: UniProtKB-KW
chromosome segregation Source: UniProtKB-UniRule
transposition, DNA-mediated Source: UniProtKB-UniRule

View the complete GO annotation on QuickGO ...

Keywordsⁱ

Molecular function	DNA-bindingUniRule annotationSAAS annotation
Biological process	Cell cycle, Cell divisionUniRule annotationSAAS annotation, Chromosome partitionUniRule annotationSAAS annotation, DNA integrationUniRule annotationSAAS annotation, DNA recombinationUniRule annotationSAAS annotation

Names & Taxonomyⁱ

Protein namesⁱ	Recommended name: Tyrosine recombinase XerDUniRule annotation
Gene namesⁱ	Name:xerDUniRule annotationImported ORF Names:RMONA_05380Imported
Organismⁱ	Rickettsia monacensisImported
Taxonomic identifierⁱ	109232 [NCBI]
Taxonomic lineageⁱ	cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rickettsiales › Rickettsiaceae › Rickettsieae › Rickettsia › spotted fever group
Proteomesⁱ	UP000018149 Componentⁱ: Chromosome

Subcellular locationⁱ

Cytoplasm
UniRule annotation
Automatic assertion according to rulesⁱ
- HAMAP-Rule:MF_01807
SAAS annotation
Automatic assertion according to rulesⁱ
- SAAS:SAAS00019473

GO - Cellular componentⁱ

cytoplasm Source: UniProtKB-SubCell

View the complete GO annotation on QuickGO ...

Keywords - Cellular componentⁱ

CytoplasmUniRule annotationSAAS annotation

Interactionⁱ

Subunit structureⁱ

Forms a cyclic heterotetrameric complex composed of two molecules of XerC and two molecules of XerD.UniRule annotationSAAS annotation

Family & Domainsⁱ

Domains and Repeats

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Domainⁱ	4 – 85	Integrase_SAM-like_NInterPro annotationAdd BLAST		82
Domainⁱ	109 – 290	Phage_integraseInterPro annotationAdd BLAST		182

Phylogenomic databases

KEGG Orthology (KO) More...KOⁱ	K04763.

KOⁱ

K04763.

Family and domain databases

Gene3Dⁱ	1.10.150.130. 1 hit. 1.10.443.10. 1 hit.
HAMAPⁱ	MF_01808. Recomb_XerC_XerD. 1 hit. MF_01807. Recomb_XerD. 1 hit.
InterProⁱ	View protein in InterPro IPR011010. DNA_brk_join_enz. IPR013762. Integrase-like_cat_sf. IPR002104. Integrase_catalytic. IPR010998. Integrase_recombinase_N. IPR004107. Integrase_SAM-like_N. IPR011932. Recomb_XerD. IPR023009. Tyrosine_recombinase_XerC/XerD.
Pfam protein domain database More...Pfamⁱ	View protein in Pfam PF02899. Phage_int_SAM_1. 1 hit. PF00589. Phage_integrase. 1 hit.
SUPFAMⁱ	SSF56349. SSF56349. 1 hit.
TIGRFAMsⁱ	TIGR02225. recomb_XerD. 1 hit.

Sequenceⁱ

Sequence statusⁱ: Complete.

A0A0B7IZU8-1 [UniParc]FASTA Add to basket

« Hide

        10         20         30         40         50
MEFISQFLEM LLAERALSKN SILSYKRDLF DFQNYLAKQK LSELNITTEN 
        60         70         80         90        100
VRDWIEYLAT NDLQARSINR KISTIKSYYE FLISENHTAF NPVLNVDLPK 
       110        120        130        140        150
YQNKLPEILS IDQIKSLLEH CSQDNSPEGI RLNAMIHLLY ASGLRVSELV 
       160        170        180        190        200
SLKLADILTN KTSKGEIRKI FSVLGKGNKE RVIVINEQAV ISIAKYLAII 
       210        220        230        240        250
DVFVNKAKPE NLIYLFPSSA LAGYMTRQNF AILLKSAALY AGLNPEHISP 
       260        270        280        290        300
HILRHSFASH LLEGGADLRV IQELLGHADI STTQIYTHLQ TNHLKKALLH 

HPLNKN

Length:306

Mass (Da):34,749

Last modified:April 1, 2015 - v1

Checksum:ⁱD48736E43662C30E

GO

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	LN794217 Genomic DNA. Translation: CEO17452.1.
NCBI Reference Sequences More...RefSeqⁱ	WP_023507865.1. NZ_LN794217.1.

Genome annotation databases

EnsemblBacteriaⁱ	CEO17452; CEO17452; RMONA_05380.
KEGGⁱ	rmc:RMONA_05380.

Protein	Similar proteins	Organisms	Length	Cluster ID	Cluster name	Size
A0A0B7IZU8	Q92IC9 A8EZ79 UPI00024F9B75 Q4UM01 A0A0F3MQ33 B0BX77 A0A0H3AWP2 A0A067AD79 A0A126E9F2 A0A162V6N5 +32	Rickettsia conorii (strain ATCC VR-613 / Malish 7) Rickettsia canadensis (strain McKiel) Rickettsia canadensis Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (Rickettsia azadi) Rickettsia felis str. Pedreira Rickettsia rickettsii (strain Iowa) Rickettsia rickettsii (strain Sheila Smith) Rickettsia buchneri Rickettsia raoultii Rickettsia endosymbiont of Proechinophthirus fluctus And more	306	UniRef90_Q92IC9	Cluster: Tyrosine recombinase XerD	43

Protein	Similar proteins	Organisms	Length	Cluster ID	Cluster name	Size
A0A0B7IZU8	Q9ZDG8 D5AWU5 Q68X13 UPI000160BECC G0GXS4 A8EZ79 UPI00024F9B75 UPI00050A2E55 C4YU62 A0A0C2QWU3 +41	Rickettsia prowazekii (strain Madrid E) Rickettsia prowazekii (strain Rp22) Rickettsia typhi (strain ATCC VR-144 / Wilmington) Rickettsia typhi Rickettsia heilongjiangensis (strain ATCC VR-1524 / 054) Rickettsia canadensis (strain McKiel) Rickettsia canadensis Rickettsia tamurae Rickettsia endosymbiont of Ixodes scapularis Rickettsia asembonensis And more	311	UniRef50_Q9ZDG8	Cluster: Tyrosine recombinase XerD	52

Cross-referencesⁱ

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	LN794217 Genomic DNA. Translation: CEO17452.1.
NCBI Reference Sequences More...RefSeqⁱ	WP_023507865.1. NZ_LN794217.1.

3D structure databases

ModBaseⁱ	Search...
MobiDBⁱ	Search...

Protocols and materials databases

Structural Biology Knowledgebase	Search...

Structural Biology Knowledgebase

Search...

Genome annotation databases

EnsemblBacteriaⁱ	CEO17452; CEO17452; RMONA_05380.
KEGGⁱ	rmc:RMONA_05380.

Phylogenomic databases

KEGG Orthology (KO) More...KOⁱ	K04763.

KOⁱ

K04763.

Family and domain databases

Gene3Dⁱ	1.10.150.130. 1 hit. 1.10.443.10. 1 hit.
HAMAPⁱ	MF_01808. Recomb_XerC_XerD. 1 hit. MF_01807. Recomb_XerD. 1 hit.
InterProⁱ	View protein in InterPro IPR011010. DNA_brk_join_enz. IPR013762. Integrase-like_cat_sf. IPR002104. Integrase_catalytic. IPR010998. Integrase_recombinase_N. IPR004107. Integrase_SAM-like_N. IPR011932. Recomb_XerD. IPR023009. Tyrosine_recombinase_XerC/XerD.
Pfam protein domain database More...Pfamⁱ	View protein in Pfam PF02899. Phage_int_SAM_1. 1 hit. PF00589. Phage_integrase. 1 hit.
SUPFAMⁱ	SSF56349. SSF56349. 1 hit.
TIGRFAMsⁱ	TIGR02225. recomb_XerD. 1 hit.
ProtoNetⁱ	Search...

Entry informationⁱ

Entry nameⁱ	A0A0B7IZU8_9RICK
Accessionⁱ	A0A0B7IZU8Primary (citable) accession number: A0A0B7IZU8
Entry historyⁱ	Integrated into UniProtKB/TrEMBL:	April 1, 2015
	Last sequence update:	April 1, 2015
	Last modified:	November 22, 2017
	This is version 22 of the entry and version 1 of the sequence. See complete history.
Entry statusⁱ	Unreviewed (UniProtKB/TrEMBL)

Miscellaneousⁱ

Keywords - Technical termⁱ

Complete proteomeImported

UniProtKB - A0A0B7IZU8 (A0A0B7IZU8_9RICK)

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Tyrosine recombinase XerD

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Functionⁱ

Sites

GO - Molecular functionⁱ

GO - Biological processⁱ

Keywordsⁱ

Names & Taxonomyⁱ

Subcellular locationⁱ

GO - Cellular componentⁱ

Keywords - Cellular componentⁱ

Interactionⁱ

Subunit structureⁱ

Family & Domainsⁱ

Domains and Repeats

Phylogenomic databases

Family and domain databases

Sequenceⁱ

Sequence databases

Genome annotation databases

Similar proteinsⁱ

Cross-referencesⁱ

Sequence databases

3D structure databases

Protocols and materials databases

Genome annotation databases

Phylogenomic databases

Family and domain databases

Entry informationⁱ

Miscellaneousⁱ

Keywords - Technical termⁱ

UniProtKB

UniParc

Help

UniRef

Proteomes

Annotation systems

Supporting data

UniProtKB - A0A0B7IZU8 (A0A0B7IZU8_9RICK)

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Tyrosine recombinase XerD

xerD

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<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Sites

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Cellular componenti

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Phylogenomic databases

Family and domain databases

Sequence databases

Genome annotation databases

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

3D structure databases

Protocols and materials databases

Genome annotation databases

Phylogenomic databases

Family and domain databases

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

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Functionⁱ

GO - Molecular functionⁱ

GO - Biological processⁱ

Names & Taxonomyⁱ

Subcellular locationⁱ

GO - Cellular componentⁱ

Interactionⁱ

Family & Domainsⁱ

Cross-referencesⁱ

Entry informationⁱ

Miscellaneousⁱ