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Protein
Submitted name:

Transcription factor SOX-17

Gene

Sox17

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 5 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi38 – 71HMG boxPROSITE-ProRule annotationAdd BLAST34

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Transcription factor SOX-17Imported
Gene namesi
Name:Sox17Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 1

Organism-specific databases

MGIiMGI:107543. Sox17.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotation

Expressioni

Gene expression databases

BgeeiENSMUSG00000025902.
ExpressionAtlasiA0A0A6YXS3. baseline and differential.

Interactioni

GO - Molecular functioni

Structurei

3D structure databases

SMRiA0A0A6YXS3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini38 – 71HMG boxInterPro annotationAdd BLAST34
Domaini213 – 353Sox C-terminalInterPro annotationAdd BLAST141

Phylogenomic databases

eggNOGiENOG410IPZH. Eukaryota.
ENOG41114B8. LUCA.
GeneTreeiENSGT00760000118988.
OMAiTAVYYCN.

Family and domain databases

Gene3Di1.10.30.10. 1 hit.
InterProiView protein in InterPro
IPR009071. HMG_box_dom.
IPR036910. HMG_box_dom_sf.
IPR033392. Sox7/17/18_central.
IPR021934. Sox_C.
PfamiView protein in Pfam
PF00505. HMG_box. 1 hit.
PF12067. Sox17_18_mid. 1 hit.
SUPFAMiSSF47095. SSF47095. 1 hit.
PROSITEiView protein in PROSITE
PS50118. HMG_BOX_2. 1 hit.
PS51516. SOX_C. 1 hit.

Sequencei

Sequence statusi: Complete.

A0A0A6YXS3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSPHGYNEQH LQTSEFQPSY FPKRSWRQRP APASFPQGKS WKALTLAEKR
60 70 80 90 100
PFVEEAERLR VQHMQDHPNY KYRPRRRKQV KRMKRVEGGF LHALVEPQAG
110 120 130 140 150
ALGPEGGRVA MDGLGLPFPE PGYPAGPPLM SPHMGPHYRD CQGLGAPALD
160 170 180 190 200
GYPLPTPDTS PLDGVEQDPA FFAAPLPGDC PAAGTYTYAP VSDYAVSVEP
210 220 230 240 250
PAGPMRVGPD PSGPAMPGIL APPSALHLYY GAMGSPAASA GRGFHAQPQQ
260 270 280 290 300
PLQPQAPPPP PQQQHPAHGP GQPSPPPEAL PCRDGTESNQ PTELLGEVDR
310 320 330 340 350
TEFEQYLPFV YKPEMGLPYQ GHDCGVNLSD SHGAISSVVS DASSAVYYCN

YPDI
Length:354
Mass (Da):38,244
Last modified:February 4, 2015 - v1
Checksum:iDE5BBE57D9DA758F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC129937 Genomic DNA. No translation available.
RefSeqiNP_001276394.1. NM_001289465.1.
NP_001276395.1. NM_001289466.1.
UniGeneiMm.279103.

Genome annotation databases

EnsembliENSMUST00000192650; ENSMUSP00000142116; ENSMUSG00000025902.
GeneIDi20671.

Similar proteinsi

Entry informationi

Entry nameiA0A0A6YXS3_MOUSE
AccessioniPrimary (citable) accession number: A0A0A6YXS3
Entry historyiIntegrated into UniProtKB/TrEMBL: February 4, 2015
Last sequence update: February 4, 2015
Last modified: January 31, 2018
This is version 23 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported