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Protein

Rhamnogalacturonate lyase

Gene

V491_05661

Organism
Pseudogymnoascus sp. VKM F-3775
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

Catalytic activityi

Endotype eliminative cleavage of L-alpha-rhamnopyranosyl-(1->4)-alpha-D-galactopyranosyluronic acid bonds of rhamnogalacturonan I domains in ramified hairy regions of pectin leaving L-rhamnopyranose at the reducing end and 4-deoxy-4,5-unsaturated D-galactopyranosyluronic acid at the non-reducing end.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLyaseUniRule annotation
Biological processCarbohydrate metabolism, Cell wall biogenesis/degradationUniRule annotation, Polysaccharide degradationUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
Rhamnogalacturonate lyaseUniRule annotation (EC:4.2.2.23UniRule annotation)
Gene namesi
ORF Names:V491_05661Imported
OrganismiPseudogymnoascus sp. VKM F-3775Imported
Taxonomic identifieri1420901 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaLeotiomycetesLeotiomycetes incertae sedisPseudeurotiaceaePseudogymnoascus
Proteomesi
  • UP000029338 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

SecretedUniRule annotation

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 19UniRule annotationAdd BLAST19
ChainiPRO_501000976520 – 537Rhamnogalacturonate lyaseUniRule annotationAdd BLAST518

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Disulfide bondi49 ↔ 93UniRule annotation
Disulfide bondi188 ↔ 199UniRule annotation

Keywords - PTMi

Disulfide bondUniRule annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini21 – 278RhgB_NInterPro annotationAdd BLAST258
Domaini286 – 358fn3_3InterPro annotationAdd BLAST73
Domaini370 – 535CBM-likeInterPro annotationAdd BLAST166

Sequence similaritiesi

Belongs to the polysaccharide lyase 4 family.UniRule annotation

Keywords - Domaini

SignalUniRule annotation

Family and domain databases

Gene3Di2.60.120.260, 1 hit
2.70.98.10, 1 hit
InterProiView protein in InterPro
IPR013784 Carb-bd-like_fold
IPR011013 Gal_mutarotase_sf_dom
IPR008979 Galactose-bd-like_sf
IPR014718 GH-type_carb-bd
IPR029413 RG-lyase_II
IPR029411 RG-lyase_III
IPR016590 Rhamnogalacturonase_B
IPR015364 RhgB_N
PANTHERiPTHR36574 PTHR36574, 1 hit
PfamiView protein in Pfam
PF14683 CBM-like, 1 hit
PF14686 fn3_3, 1 hit
PF09284 RhgB_N, 1 hit
PIRSFiPIRSF011794 Rhamnogalacturonase_B, 1 hit
SUPFAMiSSF49452 SSF49452, 1 hit
SSF49785 SSF49785, 1 hit
SSF74650 SSF74650, 1 hit

Sequencei

Sequence statusi: Complete.

A0A093ZKE9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHLFAKSVAL LGCVSSAFAA FGITTTDASY TIDAGSAETF VVTVSRTNCD
60 70 80 90 100
ITSIKYRGVE YQYQSTFSHI ASGLGSATVS ATTINSQYAK ITCVASSSDF
110 120 130 140 150
DLTHYYIIKS GDSIVYMATD TNSEPAIGEL RYIARLDSSL LPLEYPFGTA
160 170 180 190 200
STTSGGTAVE GSDVYLVNGE TRSKFYSSER FIDDKVHCVT ASDASIHACM
210 220 230 240 250
VLSTPGKEAS SGGPFFRDIN TNNGGAYTSL YNYMNSGHVQ TEAFRTGLHG
260 270 280 290 300
PYALQFSRSG IPSSVDSNFA FFSDLGISSY VAASSRGVVT GTATGVASGF
310 320 330 340 350
QIVLHWYNSA AQYWVYASTS GAFTSPAMKP GTYTMKLYQG EFQLASQSVT
360 370 380 390 400
VTAGGTTTSN IAGVTQSRTT IWQIGDWDGQ PTGFRNAANQ LRMHPSDSRM
410 420 430 440 450
SSWGPLTYTV GSSALTDFPM ALFKAVNAPV TIKFTLSSAP SGTTTLRIGT
460 470 480 490 500
TLSFAGGRPA AVINSYTAAT PAAPTKIDSR GVTRGAYRGY GEVYDVSIPA
510 520 530
GTLIAGSNTI TIDVASGSSG DTYLEPNFIF DAVELFS
Length:537
Mass (Da):56,688
Last modified:November 26, 2014 - v1
Checksum:iBC8711786C949BE5
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
JPJT01003509 Genomic DNA Translation: KFY15493.1

Genome annotation databases

EnsemblFungiiKFY15493; KFY15493; V491_05661

Similar proteinsi

Entry informationi

Entry nameiA0A093ZKE9_9PEZI
AccessioniPrimary (citable) accession number: A0A093ZKE9
Entry historyiIntegrated into UniProtKB/TrEMBL: November 26, 2014
Last sequence update: November 26, 2014
Last modified: May 23, 2018
This is version 16 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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