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Protein
Submitted name:

SRY (sex determining region Y)-box 5

Gene
N/A
Organism
Poecilia formosa (Amazon molly) (Limia formosa)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi553 – 621HMG boxPROSITE-ProRule annotationAdd BLAST69

GO - Molecular functioni

Keywordsi

Molecular functionDNA-bindingPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
SRY (sex determining region Y)-box 5Imported
OrganismiPoecilia formosa (Amazon molly) (Limia formosa)Imported
Taxonomic identifieri48698 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiNeoteleosteiAcanthomorphataOvalentariaAtherinomorphaeCyprinodontiformesPoeciliidaePoeciliinaePoecilia
Proteomesi
  • UP000028760 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotation

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini553 – 621HMG boxInterPro annotationAdd BLAST69

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili200 – 220Sequence analysisAdd BLAST21
Coiled coili222 – 280Sequence analysisAdd BLAST59
Coiled coili455 – 479Sequence analysisAdd BLAST25

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

GeneTreeiENSGT00760000119274

Family and domain databases

Gene3Di1.10.30.10, 1 hit
InterProiView protein in InterPro
IPR009071 HMG_box_dom
IPR036910 HMG_box_dom_sf
PfamiView protein in Pfam
PF00505 HMG_box, 1 hit
SMARTiView protein in SMART
SM00398 HMG, 1 hit
SUPFAMiSSF47095 SSF47095, 1 hit
PROSITEiView protein in PROSITE
PS50118 HMG_BOX_2, 1 hit

Sequencei

Sequence statusi: Complete.

A0A087XGN6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLLLSRETDP YSSMLTEPEL PQECNRMSSK RPASPYGGTD GEVTMATSRQ
60 70 80 90 100
RVEDEESEGP GGVIHLPLAS YCGKVSPHSP PSRHLDSPPS TEHDGIKGSS
110 120 130 140 150
LSPYPQHNAT SPGKEEGGGG GRPCSDGGSA TGTLGTPERR KGSLADVVDT
160 170 180 190 200
LKQRKMEELI KNEPEEAPSI ERLLSKDWKD KLLAMGSGHI GEIKGTPDSL
210 220 230 240 250
AEKERQLMGM IGQLSSLREQ LLAAHEEQKK LAASQMEKQR QQMELAKQQQ
260 270 280 290 300
DQIARQQQQL LQQQHKINLL QQQIQQVQGQ LPPLMIPVFP PDQRTLAAAA
310 320 330 340 350
AQQGFLMPPG FNYKPGCSDP YPLQLIPTTM AAAAAATPGL GPLQLQQLYA
360 370 380 390 400
AQLAAMQVSP GTKQHGGSLA PQANLGAHSP PTNSHPQGDK NRSSPPSNKN
410 420 430 440 450
KVPAAAAATT KLGPAGSMKH SAVPSSIGAP STRVSSIDLL SSLSSTAYLN
460 470 480 490 500
DHEAVSKAFA EARQMKEQLK GEQQALDAKM ASVSNLSLNN GRSDKDKAAL
510 520 530 540 550
ESLSQQLKQQ ADDKFSHAML DFTMSGDSDG SPSVSDSRIF RETRGRNNNE
560 570 580 590 600
PHIKRPMNAF MVWAKDERRK ILQAFPDMHN SNISKILGSR WKAMTNLEKQ
610 620 630 640 650
PYYEEQARLS KQHLEKYPDY KYKPRPKRTC LVDGKKLRIG EYKAIMRSRR
660 670 680 690 700
QEMRQYFSVG QQGQLPLSSA GMVYPGALSM AGMPSPQMPS EHSSMSSSPE
710 720 730 740 750
PNANHHQNPH MPGLKGDEPR IKEEELRLDD SNGDVYDDFD YEDEEADYAS

DNDNHIPH
Length:758
Mass (Da):83,041
Last modified:November 26, 2014 - v2
Checksum:iD2C1647B067B8681
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AYCK01001409 Genomic DNA No translation available.
RefSeqiXP_007577634.1, XM_007577572.2

Genome annotation databases

EnsembliENSPFOT00000004948; ENSPFOP00000004939; ENSPFOG00000004694
GeneIDi103155731

Similar proteinsi

Entry informationi

Entry nameiA0A087XGN6_POEFO
AccessioniPrimary (citable) accession number: A0A087XGN6
Entry historyiIntegrated into UniProtKB/TrEMBL: October 29, 2014
Last sequence update: November 26, 2014
Last modified: March 28, 2018
This is version 20 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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Main funding by: National Institutes of Health