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Protein

DNA-directed RNA polymerase subunit beta

Gene

F751_5128

Organism
Auxenochlorella protothecoides (Green microalga) (Chlorella protothecoides)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotation

Catalytic activityi

Nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1).UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionNucleotidyltransferaseUniRule annotation, Transferase
Biological processTranscription

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit betaUniRule annotation (EC:2.7.7.6UniRule annotation)
Gene namesi
ORF Names:F751_5128Imported
OrganismiAuxenochlorella protothecoides (Green microalga) (Chlorella protothecoides)Imported
Taxonomic identifieri3075 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeChlorophytaTrebouxiophyceaeChlorellalesChlorellaceaeAuxenochlorella
Proteomesi
  • UP000028924 Componenti: Unassembled WGS sequence

Subcellular locationi

    Keywords - Cellular componenti

    DNA-directed RNA polymeraseUniRule annotationImported

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    Domaini56 – 442RNA_pol_Rpb2_1InterPro annotationAdd BLAST387
    Domaini211 – 393RNA_pol_Rpb2_2InterPro annotationAdd BLAST183
    Domaini472 – 533RNA_pol_Rpb2_3InterPro annotationAdd BLAST62
    Domaini532 – 554RNA_pol_Rpb2_4InterPro annotationAdd BLAST23
    Domaini576 – 616RNA_pol_Rpb2_5InterPro annotationAdd BLAST41
    Domaini623 – 994RNA_pol_Rpb2_6InterPro annotationAdd BLAST372
    Domaini996 – 1086RNA_pol_Rpb2_7InterPro annotationAdd BLAST91

    Sequence similaritiesi

    Belongs to the RNA polymerase beta chain family.UniRule annotation

    Phylogenomic databases

    KOiK03021.

    Family and domain databases

    CDDicd00653. RNA_pol_B_RPB2. 1 hit.
    Gene3Di2.40.270.10. 1 hit.
    3.90.1110.10. 1 hit.
    InterProiView protein in InterPro
    IPR015712. DNA-dir_RNA_pol_su2.
    IPR007120. DNA-dir_RNAP_su2_dom.
    IPR037033. DNA-dir_RNAP_su2_hyb_sf.
    IPR007121. RNA_pol_bsu_CS.
    IPR007644. RNA_pol_bsu_protrusion.
    IPR007642. RNA_pol_Rpb2_2.
    IPR037034. RNA_pol_Rpb2_2_sf.
    IPR007645. RNA_pol_Rpb2_3.
    IPR007646. RNA_pol_Rpb2_4.
    IPR007647. RNA_pol_Rpb2_5.
    IPR007641. RNA_pol_Rpb2_7.
    PANTHERiPTHR20856. PTHR20856. 2 hits.
    PfamiView protein in Pfam
    PF04563. RNA_pol_Rpb2_1. 1 hit.
    PF04561. RNA_pol_Rpb2_2. 1 hit.
    PF04565. RNA_pol_Rpb2_3. 1 hit.
    PF04566. RNA_pol_Rpb2_4. 1 hit.
    PF04567. RNA_pol_Rpb2_5. 1 hit.
    PF00562. RNA_pol_Rpb2_6. 1 hit.
    PF04560. RNA_pol_Rpb2_7. 1 hit.
    PROSITEiView protein in PROSITE
    PS01166. RNA_POL_BETA. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    A0A087SEY2-1 [UniParc]FASTAAdd to basket

    « Hide

            10         20         30         40         50
    MPVTKGSSAK VVDAGSPHSV LGDAGIDDCD PAKLTQPIKE VKDKYQLLPA
    60 70 80 90 100
    FLRVRGLVRQ HIDSFNYFIN HEMKKIIHAK GNERVTCDTD PNFYLKYLNI
    110 120 130 140 150
    YVGKPSIEEE YIVTDISPQQ CRLRDMTYSA PISVDVEYTR GKEIVMKRGK
    160 170 180 190 200
    NGQGALFLGR MPLMLRSDRC VLKGKSEAEL AKLGECPLDP GGYFVVKGTE
    210 220 230 240 250
    KVILIQEQLS KNRIIIDTDS HGGIVASVTS STHERKSKTN IVTKHGRLLL
    260 270 280 290 300
    RHNAFTEDIN ILAVLRAMGV ESDQEFVQLV GSEPAFGSLL APTLQHCREE
    310 320 330 340 350
    STGVFTQAQA LEFLAARVKS SRPPGGFQRR GRSRVDEARD ILSGVVLCHV
    360 370 380 390 400
    PVPRYNFQAK VVYLAVMVRR MLCAMLDPGF VDDRDYYGNK RLELAGGLLA
    410 420 430 440 450
    LLFEDLFKKL NADLKHHTDA TLSKANRATQ YDIAKCLGTH TITAGLENAI
    460 470 480 490 500
    SSGNWTIKRF RMERKGVTQA RVLSRLSFIS AVGMMTRITS QFEKTRKVSG
    510 520 530 540 550
    PRALQPSQWG MLCPADTPEG ESCGLVKNLA LMTHHDAVHI AADGGRVCRP
    560 570 580 590 600
    LIICDAGVPR VTGAHLARLK AGEWSFNDFL TAGLVEYLDV NEENNALVAL
    610 620 630 640 650
    YECFCNPATT HLEIEPFTVL GVVAGLIPYP HHNQSPRNTY QCAMGKQAMG
    660 670 680 690 700
    NIAFNQLQRI DTLMYLLQYP QRPLLTTKTI ELVGFDRLGA GQNAIVAVMS
    710 720 730 740 750
    YSGYDIEDAI VMNKASLDRG FGRCVVMRKY ATTLKKYGNR TQDRITRPAE
    760 770 780 790 800
    AAAPAGASTT TTTRPGGRFS VLDADGIAGA GRVLTQGECL VHKQSGYRAA
    810 820 830 840 850
    PVMWKGFPGE RCAVDRVMVT SNDDSACVVK VLVRHTRRPE LGDKFSSRHG
    860 870 880 890 900
    QKGVVGCIVP EADLPFSERG VVPDLIMNPH GFPSRMTVGK MIELLGSKAG
    910 920 930 940 950
    AVSGRLHYGT AFGEGSGLAD RVDALSAELV AAGFSYSGKD LLHSGITGEA
    960 970 980 990 1000
    LEAYVFMGPV YYQKLKHMVM DKMHARARGP RVVLTRQPTE GRSRDGGLRL
    1010 1020 1030 1040 1050
    GEMERDCLIG YGASALLLER LMISSDQFEV HVCTHCGLLG YWDAAARRAR
    1060 1070 1080 1090
    CPGTGRADAM ATMKLPYAAK LLFQEMQAMN IVPRLVLAEA
    Length:1,090
    Mass (Da):119,646
    Last modified:October 29, 2014 - v1
    Checksum:iDA04D800C25F1C50
    GO

    Sequence databases

    Select the link destinations:
    EMBLi
    GenBanki
    DDBJi
    Links Updated
    KL662106 Genomic DNA. Translation: KFM24286.1.
    RefSeqiXP_011397173.1. XM_011398871.1.

    Genome annotation databases

    GeneIDi23616519.
    KEGGiapro:F751_5128.

    Similar proteinsi

    Entry informationi

    Entry nameiA0A087SEY2_AUXPR
    AccessioniPrimary (citable) accession number: A0A087SEY2
    Entry historyiIntegrated into UniProtKB/TrEMBL: October 29, 2014
    Last sequence update: October 29, 2014
    Last modified: January 31, 2018
    This is version 20 of the entry and version 1 of the sequence. See complete history.
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported