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Protein

General transcription factor IIH subunit 4

Gene

SPRG_04339

Organism
Saprolegnia parasitica (strain CBS 223.65)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Component of the core-TFIIH basal transcription factor involved in nucleotide excision repair (NER) of DNA.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processDNA damage, DNA repairUniRule annotation, Transcription, Transcription regulationUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
General transcription factor IIH subunit 4UniRule annotation
Gene namesi
ORF Names:SPRG_04339Imported
OrganismiSaprolegnia parasitica (strain CBS 223.65)Imported
Taxonomic identifieri695850 [NCBI]
Taxonomic lineageiEukaryotaStramenopilesOomycetesSaprolegnialesSaprolegniaceaeSaprolegnia
Proteomesi
  • UP000030745 Componenti: Unassembled WGS sequence

Organism-specific databases

EuPathDBiFungiDB:SPRG_04339.

Subcellular locationi

  • Nucleus UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

NucleusUniRule annotation

Family & Domainsi

Sequence similaritiesi

Belongs to the TFB2 family.UniRule annotation

Phylogenomic databases

KOiK03144.
OMAiYLEQYAH.

Family and domain databases

InterProiView protein in InterPro
IPR004598. TFIIH_p52/Tfb2.
PANTHERiPTHR13152. PTHR13152. 1 hit.
PfamiView protein in Pfam
PF03849. Tfb2. 1 hit.
TIGRFAMsiTIGR00625. tfb2. 1 hit.

Sequencei

Sequence statusi: Complete.

A0A067CUG5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNAFEYLATR PVASVDRLFD DPWACQAVFQ SLPALSQQIV MRLLFAAGET
60 70 80 90 100
TRDTILSWVH ESSTDAMVAA IDKLSHLRVL AKAPHGLALN THFQAQLRTA
110 120 130 140 150
LSSLGGSPWE DGRQKLPAEK PIAAMDLENY ARTRWDAVLH FMVGSTAVQA
160 170 180 190 200
PPDTVVQILE QTKLMQASPE DRRKLHITDT GYEFMLKDIH AQTWIFVLEY
210 220 230 240 250
IKNIDKRGVM SAEEMLQFLF QMSYCQMHQY YAVADLTRNQ QQLLGDLVEL
260 270 280 290 300
GLLYRSNSRA TRFYTTSLAV NLIFGGLAGQ TRPAIQMNQS LESFHQAATV
310 320 330 340 350
PKGPSEASGA SSSHLSIIVE TNFKVYAYTS SSLHIAMLSV FVDIVVRLKN
360 370 380 390 400
MAVGFLTRES IRSALIHGIS AEQIYDFLMQ HAHPKMVQNT PVIPENIADQ
410 420 430 440 450
LYLWQRERNR IQFVPGELLE GFTLSEEFAA VVQYARDLDV LTWSDASQHK
460 470
LTVAQHGADA VRKYIQSLRG
Length:470
Mass (Da):52,792
Last modified:September 3, 2014 - v1
Checksum:iF820ABD519E12564
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
KK583201 Genomic DNA. Translation: KDO30437.1.
RefSeqiXP_012198659.1. XM_012343269.1.

Genome annotation databases

EnsemblProtistsiKDO30437; KDO30437; SPRG_04339.
GeneIDi24126788.
KEGGispar:SPRG_04339.

Similar proteinsi

Entry informationi

Entry nameiA0A067CUG5_SAPPC
AccessioniPrimary (citable) accession number: A0A067CUG5
Entry historyiIntegrated into UniProtKB/TrEMBL: September 3, 2014
Last sequence update: September 3, 2014
Last modified: June 7, 2017
This is version 13 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported