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Protein
Submitted name:

Syndecan binding protein (Syntenin), isoform CRA_c

Gene

SDCBP

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Syndecan binding protein (Syntenin), isoform CRA_cImported
Gene namesi
Name:SDCBPImported
ORF Names:hCG_1787561Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Organism-specific databases

EuPathDBiHostDB:ENSG00000137575.11.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei257 – 279HelicalSequence analysisAdd BLAST23

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

PaxDbiA0A024R7Z5.
PRIDEiA0A024R7Z5.

Expressioni

Gene expression databases

BgeeiENSG00000137575.
ExpressionAtlasiA0A024R7Z5. baseline and differential.

Structurei

3D structure databases

ProteinModelPortaliA0A024R7Z5.
SMRiA0A024R7Z5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini114 – 193PDZInterPro annotationAdd BLAST80
Domaini198 – 273PDZInterPro annotationAdd BLAST76

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG410IEB7. Eukaryota.
ENOG410YNPQ. LUCA.
KOiK17254.
PhylomeDBiA0A024R7Z5.

Family and domain databases

InterProiView protein in InterPro
IPR001478. PDZ.
IPR030528. SDCBP.
PANTHERiPTHR12345:SF23. PTHR12345:SF23. 1 hit.
PfamiView protein in Pfam
PF00595. PDZ. 1 hit.
SMARTiView protein in SMART
SM00228. PDZ. 2 hits.
SUPFAMiSSF50156. SSF50156. 2 hits.
PROSITEiView protein in PROSITE
PS50106. PDZ. 2 hits.

Sequencei

Sequence statusi: Complete.

A0A024R7Z5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSLYPSLEDL KVDKVIQAQT AFSANPANPA ILSEASAPIP HDGNLYPRLY
60 70 80 90 100
PELSQYMGLS LNEEEIRANV AVVSGAPLQG QLVARPSSIN YMVAPVTGND
110 120 130 140 150
VGIRRAEIKQ GIREVILCKD QDGKIGLRLK SIDNGIFVQL VQANSPASLV
160 170 180 190 200
GLRFGDQVLQ INGENCAGWS SDKAHKVLKQ AFGEKITMTI RDRPFERTIT
210 220 230 240 250
MHKDSTGHVG FIFKNGKITS IVKDSSAARN GLLTEHNICE INGQNVIGLK
260 270 280 290
DSQIADILST SGTVVTITIM PAFIFEHIIK RMAPSIMKSL MDHTIPEV
Length:298
Mass (Da):32,444
Last modified:July 9, 2014 - v1
Checksum:i574E1349F86F949F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CH471068 Genomic DNA. Translation: EAW86815.1.
RefSeqiNP_001007068.1. NM_001007067.1.
NP_005616.2. NM_005625.3.
UniGeneiHs.200804.

Genome annotation databases

GeneIDi6386.
KEGGihsa:6386.

Similar proteinsi

Entry informationi

Entry nameiA0A024R7Z5_HUMAN
AccessioniPrimary (citable) accession number: A0A024R7Z5
Entry historyiIntegrated into UniProtKB/TrEMBL: July 9, 2014
Last sequence update: July 9, 2014
Last modified: September 27, 2017
This is version 28 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.