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Protein
Submitted name:

Syndecan binding protein (Syntenin), isoform CRA_c

Gene

SDCBP

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Syndecan binding protein (Syntenin), isoform CRA_cImported
Gene namesi
Name:SDCBPImported
ORF Names:hCG_1787561Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei257 – 279HelicalSequence analysisAdd BLAST23

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

PaxDbiA0A024R7Z5.
PRIDEiA0A024R7Z5.

Expressioni

Gene expression databases

ExpressionAtlasiA0A024R7Z5. baseline and differential.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000260130.

Structurei

3D structure databases

ProteinModelPortaliA0A024R7Z5.
SMRiA0A024R7Z5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini114 – 193PDZ (DHR)InterPro annotationAdd BLAST80
Domaini198 – 273PDZ (DHR)InterPro annotationAdd BLAST76

Sequence similaritiesi

Contains 2 PDZ (DHR) domains.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG410IEB7. Eukaryota.
ENOG410YNPQ. LUCA.
KOiK17254.
PhylomeDBiA0A024R7Z5.

Family and domain databases

Gene3Di2.30.42.10. 2 hits.
InterProiIPR001478. PDZ.
IPR030528. SDCBP.
[Graphical view]
PANTHERiPTHR12345:SF10. PTHR12345:SF10. 1 hit.
PfamiPF00595. PDZ. 1 hit.
[Graphical view]
SMARTiSM00228. PDZ. 2 hits.
[Graphical view]
SUPFAMiSSF50156. SSF50156. 2 hits.
PROSITEiPS50106. PDZ. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

A0A024R7Z5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSLYPSLEDL KVDKVIQAQT AFSANPANPA ILSEASAPIP HDGNLYPRLY
60 70 80 90 100
PELSQYMGLS LNEEEIRANV AVVSGAPLQG QLVARPSSIN YMVAPVTGND
110 120 130 140 150
VGIRRAEIKQ GIREVILCKD QDGKIGLRLK SIDNGIFVQL VQANSPASLV
160 170 180 190 200
GLRFGDQVLQ INGENCAGWS SDKAHKVLKQ AFGEKITMTI RDRPFERTIT
210 220 230 240 250
MHKDSTGHVG FIFKNGKITS IVKDSSAARN GLLTEHNICE INGQNVIGLK
260 270 280 290
DSQIADILST SGTVVTITIM PAFIFEHIIK RMAPSIMKSL MDHTIPEV
Length:298
Mass (Da):32,444
Last modified:July 9, 2014 - v1
Checksum:i574E1349F86F949F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CH471068 Genomic DNA. Translation: EAW86815.1.
RefSeqiNP_001007068.1. NM_001007067.1.
NP_005616.2. NM_005625.3.
UniGeneiHs.200804.

Genome annotation databases

GeneIDi6386.
KEGGihsa:6386.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CH471068 Genomic DNA. Translation: EAW86815.1.
RefSeqiNP_001007068.1. NM_001007067.1.
NP_005616.2. NM_005625.3.
UniGeneiHs.200804.

3D structure databases

ProteinModelPortaliA0A024R7Z5.
SMRiA0A024R7Z5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000260130.

Proteomic databases

PaxDbiA0A024R7Z5.
PRIDEiA0A024R7Z5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi6386.
KEGGihsa:6386.

Organism-specific databases

CTDi6386.

Phylogenomic databases

eggNOGiENOG410IEB7. Eukaryota.
ENOG410YNPQ. LUCA.
KOiK17254.
PhylomeDBiA0A024R7Z5.

Miscellaneous databases

GenomeRNAii6386.

Gene expression databases

ExpressionAtlasiA0A024R7Z5. baseline and differential.

Family and domain databases

Gene3Di2.30.42.10. 2 hits.
InterProiIPR001478. PDZ.
IPR030528. SDCBP.
[Graphical view]
PANTHERiPTHR12345:SF10. PTHR12345:SF10. 1 hit.
PfamiPF00595. PDZ. 1 hit.
[Graphical view]
SMARTiSM00228. PDZ. 2 hits.
[Graphical view]
SUPFAMiSSF50156. SSF50156. 2 hits.
PROSITEiPS50106. PDZ. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiA0A024R7Z5_HUMAN
AccessioniPrimary (citable) accession number: A0A024R7Z5
Entry historyi
Integrated into UniProtKB/TrEMBL: July 9, 2014
Last sequence update: July 9, 2014
Last modified: November 2, 2016
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.