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Protein
Submitted name:

Stromal cell derived factor 4, isoform CRA_b

Gene

SDF4

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Calcium bindingi111 – 122PROSITE-ProRule annotationAdd BLAST12
Calcium bindingi150 – 161PROSITE-ProRule annotationAdd BLAST12
Calcium bindingi246 – 257PROSITE-ProRule annotationAdd BLAST12
Calcium bindingi291 – 302PROSITE-ProRule annotationAdd BLAST12

GO - Molecular functioni

Keywordsi

LigandCalciumPROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Stromal cell derived factor 4, isoform CRA_bImported
Gene namesi
Name:SDF4Imported
ORF Names:hCG_19193Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Organism-specific databases

EuPathDBiHostDB:ENSG00000078808.16.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 36Sequence analysisAdd BLAST36
ChainiPRO_500153647937 – 348Sequence analysisAdd BLAST312

Proteomic databases

PaxDbiA0A024R0A9.
PRIDEiA0A024R0A9.

Expressioni

Gene expression databases

BgeeiENSG00000078808.
ExpressionAtlasiA0A024R0A9. baseline and differential.

Structurei

3D structure databases

ProteinModelPortaliA0A024R0A9.
SMRiA0A024R0A9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini98 – 133EF-handInterPro annotationAdd BLAST36
Domaini137 – 172EF-handInterPro annotationAdd BLAST36
Domaini233 – 268EF-handInterPro annotationAdd BLAST36
Domaini278 – 313EF-handInterPro annotationAdd BLAST36

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiKOG4251. Eukaryota.
ENOG410XSH7. LUCA.

Family and domain databases

InterProiView protein in InterPro
IPR011992. EF-hand-dom_pair.
IPR018247. EF_Hand_1_Ca_BS.
IPR002048. EF_hand_dom.
PfamiView protein in Pfam
PF13202. EF-hand_5. 1 hit.
PF13499. EF-hand_7. 1 hit.
SMARTiView protein in SMART
SM00054. EFh. 3 hits.
SUPFAMiSSF47473. SSF47473. 1 hit.
PROSITEiView protein in PROSITE
PS00018. EF_HAND_1. 4 hits.
PS50222. EF_HAND_2. 4 hits.

Sequencei

Sequence statusi: Complete.

A0A024R0A9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVWPWVAMAS RWGPLIGLAP CCLWLLGAVL LMDASARPAN HSSTRERVAN
60 70 80 90 100
REENEILPPD HLNGVKLEMD GHLNRGFHQE VFLGKDLGGF DEDAEPRRSR
110 120 130 140 150
RKLMVIFSKV DVNTDRKISA KEMQRWIMEK TAEHFQEAME ESKTHFRAVD
160 170 180 190 200
PDGDGHVSWD EYKVKFLASK GHSEKEVADA IRLNEELKVD EETQEVLENL
210 220 230 240 250
KDRWYQADSP PADLLLTEEE FLSFLHPEHS RGMLRFMVKE IVRDLDQDGD
260 270 280 290 300
KQLSVPEFIS LPVGTVENQQ GQDIDDNWVK DRKKEFEELI DSNHDGIVTA
310 320 330 340
EELENVPTLP LQPIGTLNSH FVRLAAELGG GKATLTCAPL ARRATWTP
Length:348
Mass (Da):39,608
Last modified:July 9, 2014 - v1
Checksum:i1832BC4741A9506A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CH471183 Genomic DNA. Translation: EAW56276.1.
RefSeqiNP_057631.1. NM_016547.2.
UniGeneiHs.42806.

Genome annotation databases

GeneIDi51150.

Similar proteinsi

Entry informationi

Entry nameiA0A024R0A9_HUMAN
AccessioniPrimary (citable) accession number: A0A024R0A9
Entry historyiIntegrated into UniProtKB/TrEMBL: July 9, 2014
Last sequence update: July 9, 2014
Last modified: September 27, 2017
This is version 26 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.