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Aedes aegypti (Yellowfever mosquito) (Culex aegypti)    Eukaryota › Metazoa › Ecdysozoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Diptera › Nematocera › Culicoidea › Culicidae › Culicinae › Aedini › Aedes › Stegomyia Reference proteome set (16,658) |
| Ailuropoda melanoleuca (Giant panda) Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Laurasiatheria › Carnivora › Caniformia › Ursidae › Ailuropoda Reference proteome set (21,139) |
| Ajellomyces capsulata (strain G186AR / H82 / ATCC MYA-2454 / RMSCC 2432) (Darling's disease fungus) (Histoplasma capsulatum) Eukaryota › Fungi › Dikarya › Ascomycota › Pezizomycotina › Eurotiomycetes › Eurotiomycetidae › Onygenales › Ajellomycetaceae › Ajellomyces Reference proteome set (9,214) |
| Amphimedon queenslandica (Sponge) Eukaryota › Metazoa › Porifera › Demospongiae › Ceractinomorpha › Haplosclerida › Niphatidae › Amphimedon Reference proteome set (29,741) |
| Anolis carolinensis (Green anole) (American chameleon) Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Lepidosauria › Squamata › Iguania › Iguanidae › Polychrotinae › Anolis Reference proteome set (18,880) |
| Anopheles darlingi (Mosquito) Eukaryota › Metazoa › Ecdysozoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Diptera › Nematocera › Culicoidea › Culicidae › Anophelinae › Anopheles Reference proteome set (11,437) |
| Anopheles gambiae (African malaria mosquito) Eukaryota › Metazoa › Ecdysozoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Diptera › Nematocera › Culicoidea › Culicidae › Anophelinae › Anopheles Reference proteome set (13,072) |
| Apis mellifera (Honeybee) Eukaryota › Metazoa › Ecdysozoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Hymenoptera › Apocrita › Aculeata › Apoidea › Apidae › Apis Reference proteome set (10,958) |
| Arabidopsis thaliana (Mouse-ear cress) Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › malvids › Brassicales › Brassicaceae › Camelineae › Arabidopsis Reference proteome set (31,845) |
| Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (Yeast) (Eremothecium gossypii) Eukaryota › Fungi › Dikarya › Ascomycota › Saccharomycotina › Saccharomycetes › Saccharomycetales › Saccharomycetaceae › Eremothecium Reference proteome set (926) |
Atta cephalotes (Leafcutter ant)  Eukaryota › Metazoa › Ecdysozoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Hymenoptera › Apocrita › Aculeata › Vespoidea › Formicidae › Myrmicinae › Atta Reference proteome set (18,074) |
| Babesia bovis Eukaryota › Alveolata › Apicomplexa › Aconoidasida › Piroplasmida › Babesiidae › Babesia Reference proteome set (3,687) |
| Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211) (Frog chytrid fungus) Eukaryota › Fungi › Chytridiomycota › Chytridiomycetes › Rhizophydiales › Rhizophydiales incertae sedis › Batrachochytrium Reference proteome set (8,610) |
| Bombyx mori (Silk moth) Eukaryota › Metazoa › Ecdysozoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Lepidoptera › Glossata › Ditrysia › Bombycoidea › Bombycidae › Bombycinae › Bombyx Reference proteome set (14,777) |
| Bos taurus (Bovine) Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Laurasiatheria › Cetartiodactyla › Ruminantia › Pecora › Bovidae › Bovinae › Bos Reference proteome set (23,870) |
| Brachypodium distachyon (Purple false brome) (Trachynia distachya) Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BEP clade › Pooideae › Brachypodieae › Brachypodium Reference proteome set (29,942) |
| Branchiostoma floridae (Florida lancelet) (Amphioxus) Eukaryota › Metazoa › Chordata › Cephalochordata › Branchiostomidae › Branchiostoma Reference proteome set (28,544) |
| Caenorhabditis briggsae Eukaryota › Metazoa › Ecdysozoa › Nematoda › Chromadorea › Rhabditida › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis Reference proteome set (21,703) |
| Caenorhabditis elegans Eukaryota › Metazoa › Ecdysozoa › Nematoda › Chromadorea › Rhabditida › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis Reference proteome set (25,116) |
| Caenorhabditis japonica Eukaryota › Metazoa › Ecdysozoa › Nematoda › Chromadorea › Rhabditida › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis Reference proteome set (35,063) |
| Callithrix jacchus (White-tufted-ear marmoset) Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Platyrrhini › Cebidae › Callitrichinae › Callithrix Reference proteome set (42,014) |
| Candida albicans (strain SC5314 / ATCC MYA-2876) (Yeast) Eukaryota › Fungi › Dikarya › Ascomycota › Saccharomycotina › Saccharomycetes › Saccharomycetales › mitosporic Saccharomycetales › Candida Reference proteome set (9,111) |
| Canis familiaris (Dog) (Canis lupus familiaris) Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Laurasiatheria › Carnivora › Caniformia › Canidae › Canis Reference proteome set (26,419) |
| Cavia porcellus (Guinea pig) Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Hystricognathi › Caviidae › Cavia Reference proteome set (19,910) |
| Chlamydomonas reinhardtii (Chlamydomonas smithii) Eukaryota › Viridiplantae › Chlorophyta › Chlorophyceae › Chlamydomonadales › Chlamydomonadaceae › Chlamydomonas Reference proteome set (14,337) |