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Overview

Proteome nameOryza sativa subsp. japonica Rice - Reference proteome
Proteins48,933
Proteome IDiUP000059680
Straincv. Nipponbare
Taxonomy39947 - Oryza sativa subsp. japonica
Last modifiedJune 21, 2017
Genome assembly and annotationi GCA_001433935.1 from ENA/EMBL

Oryza sativa (rice) is a monocotyledonous flowering plant of the family Poaceae and is one of the most important crop plants in the world, providing the principal food source for half of the world's population.

Oryza sativa subsp. japonica is one of three major subspecies of rice, the others being indica and javanica. Oryza sativa subsp. japonica is short-grained and high in amylopectin so that the grains stick together when cooked, which distinguishes it from subsp. indica which is long grained and not sticky.

Oryza sativa subsp. japonica is grown in dry fields, mainly in temperate or colder climates such as Japan.

Oryza sativa has a haploid chromosome number of 12, containing 370 Mb with 30,000 protein-coding genes. Rice was an obvious choice for the first whole genome sequencing of a cereal crop. It is the smallest of the major cereal crop genomes and is the easiest to transform genetically. The cultivar sequenced from the japonica subspecies was Nipponbare (http://www.thericejournal.com/content/6/1/4/abstract).

Componentsi

DownloadView all proteins
Component nameGenome Accession(s)
Proteins
Chromosome 16669
Chromosome 25346
Chromosome 35767
Chromosome 44391
Chromosome 53913
Chromosome 63991
Chromosome 73755
Chromosome 83415
Chromosome 92797
Chromosome 102730
Chromosome 113203
Chromosome 122907
Mitochondrion60
Chloroplast83

Publications

  1. "The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants."
    Notsu Y., Masood S., Nishikawa T., Kubo N., Akiduki G., Nakazono M., Hirai A., Kadowaki K.
    Mol. Genet. Genomics 2002:434-445(2002) [PubMed] [Europe PMC] [Abstract]
  2. "The map-based sequence of the rice genome."
    Nature 2005:793-800(2005) [PubMed] [Europe PMC] [Abstract]