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Overview

Proteome nameSus scrofa - Reference proteome
Proteins26,103
Proteome IDiUP000008227
StrainDuroc
Taxonomy9823 - Sus scrofa
Last modifiedMay 16, 2017
Genome assemblyi GCA_000003025.6 from Ensembl
Genome annotationi Ensembl
© imagess3.enature.com

Sus scrofa, the domestic pig, is a member of the Artiodactyla (even-toed ungulates). First domesticated around 10,000 years ago, they are an important agricultural species worldwide. In addition, pigs are useful as a non-primate biomedical model organism, especially for the study of complex traits (e.g. obesity, cardiovascular disease, and arthritis) and for xenotransplantation experiments.

The first draft genome was released in 2012 by the Swine Genome Sequencing Consortium, using sequence derived from a single Duroc sow (Duroc 2-14). Assembly 10.2 contains approximately 2.6 Gb of sequence and 21,000 protein-coding genes.

Componentsi

DownloadView all proteins
Component nameGenome Accession(s)
Proteins
Chromosome 12084
Chromosome 22154
Chromosome 31413
Chromosome 41339
Chromosome 51167
Chromosome 61904
Chromosome 71617
Chromosome 8792
Chromosome 91326
Chromosome 10487
Chromosome 11374
Chromosome 121143
Chromosome 131482
Chromosome 141417
Chromosome 15920
Chromosome 16411
Chromosome 17681
Chromosome 18480
Chromosome X1648
Mitochondrion18
Unplaced
3319
Chromosome Y11

Publications

  1. Submitted (NOV-2009) to the EMBL/GenBank/DDBJ databases
  2. "Complete nucleotide sequence of pig (Sus scrofa) mitochondrial genome and dating evolutionary divergence within artiodactyla."
    Lin C.S., Sun Y.L., Liu C.Y., Yang P.C., Chang L.C., Cheng I.C., Mao S.J.T., Huang M.C.
    Gene 1999:107-114(1999) [PubMed] [Europe PMC] [Abstract]
  3. Datahose
    Submitted (FEB-2017) to the EMBL/GenBank/DDBJ databases