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Overview

StatusReference proteome
Proteins44,466
Proteome IDiUP000006729
Taxonomy3694 - Populus trichocarpa
Straincv. Nisqually
Last modifiedJanuary 22, 2018
Genome assembly and annotationi GCA_000002775.2 from ENA/EMBL
© plants.usda.gov

Populus trichocarpa (Black cottonwood) is a fast growing deciduous tree belonging to the willow family (Salicaceae) which is grown for its timber and for fiber products, mainly in North America.

The genus Populus is widely distributed over the northern hemisphere with many species that are economically important. Populus trichocarpa was chosen as the first tree to be sequenced because of the relatively small size of its genome.

The Populus trichocarpa genome has a haploid chromosome number of 19, and with over 400 Mb is nearly four times larger than the genome of Arabidopsis. There are 44,000 protein-coding genes. About 8,000 pairs of duplicated genes are present due to an early genome duplication event.

Componentsi

DownloadView all proteins
Component nameGenome Accession(s)
Proteins
Unassembled WGS sequence2712
Chloroplast88
Linkage group LGVIII2415
Linkage group LGXII1547
Linkage group LGVII1581
Linkage group LGXIX1524
Linkage group LGIV2455
Linkage group LGV2908
Linkage group LGIII2290
Linkage group LGXVI1518
Linkage group LGXIV2075
Linkage group LGXI1778
Linkage group LGXIII1616
Linkage group LGI5068
Linkage group LGIX1811
Linkage group LGII2806
Linkage group LGXVII1556
Linkage group LGX2684
Linkage group LGVI2972
Linkage group LGXV1610
Linkage group LGXVIII1507