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Overview

Proteome nameGallus gallus Red jungle fowl - Reference proteome
Proteins29,480
Proteome IDiUP000000539
StrainRed jungle fowl
Taxonomy9031 - Gallus gallus
Last modifiedAugust 23, 2017
Genome assembly and annotationi GCA_000002315.3 from Ensembl
© calphotos.berkeley.edu

The red jungle fowl is a herbivorous and insectivorous member of the Phasianidae family. It is the closest wild ancestor of the domesticated chicken, its subspecies. After domestication had taken place 6,000-8,000 years ago in Asia, this species spread all over the world. The chicken is an important agricultural animal and a source of meat and eggs. In biomedical research it serves as a model organism to study various aspects of virology, oncogenesis, immunology, and especially embryogenesis. Since it provides an evolutionary link between mammals and other groups of vertebrates, sequencing its genome is of a significant importance.

The chicken genome has 39 chromosomes containing 1.1 Gb with 20,000-23,000 protein-coding genes. The reference proteome is derived from the genome sequence published in 2004.

Componentsi

DownloadView all proteins
Component nameGenome Accession(s)
Proteins
Chromosome 13343
Chromosome 22213
Chromosome 31958
Chromosome 41804
Chromosome 51508
Chromosome 6868
Chromosome 7879
Chromosome 8926
Chromosome 9734
Chromosome 10699
Chromosome 11615
Chromosome 12600
Chromosome 13611
Chromosome 14689
Chromosome 15619
Chromosome 16145
Chromosome 17481
Chromosome 18569
Chromosome 19564
Chromosome 20589
Chromosome 21424
Chromosome 22202
Chromosome 23377
Chromosome 24329
Chromosome 25350
Chromosome 26402
Chromosome 27471
Chromosome 28482
Chromosome 3215
Chromosome W49
Chromosome Z1297
Unplaced
4648
Mitochondrion13
Miscellaneous, Linkage group LGE22C19W28_E50C230
Miscellaneous, Linkage group LGE640
Chromosome 316
Chromosome 308

Publications

  1. "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution."
    Hillier L.W., Miller W., Birney E., Warren W., Hardison R.C., Ponting C.P., Bork P., Burt D.W., Groenen M.A.M., Delany M.E., Dodgson J.B., Chinwalla A.T., Cliften P.F., Clifton S.W., Delehaunty K.D., Fronick C., Fulton R.S., Graves T.A.
    , Kremitzki C., Layman D., Magrini V., McPherson J.D., Miner T.L., Minx P., Nash W.E., Nhan M.N., Nelson J.O., Oddy L.G., Pohl C.S., Randall-Maher J., Smith S.M., Wallis J.W., Yang S.-P., Romanov M.N., Rondelli C.M., Paton B., Smith J., Morrice D., Daniels L., Tempest H.G., Robertson L., Masabanda J.S., Griffin D.K., Vignal A., Fillon V., Jacobbson L., Kerje S., Andersson L., Crooijmans R.P., Aerts J., van der Poel J.J., Ellegren H., Caldwell R.B., Hubbard S.J., Grafham D.V., Kierzek A.M., McLaren S.R., Overton I.M., Arakawa H., Beattie K.J., Bezzubov Y., Boardman P.E., Bonfield J.K., Croning M.D.R., Davies R.M., Francis M.D., Humphray S.J., Scott C.E., Taylor R.G., Tickle C., Brown W.R.A., Rogers J., Buerstedde J.-M., Wilson S.A., Stubbs L., Ovcharenko I., Gordon L., Lucas S., Miller M.M., Inoko H., Shiina T., Kaufman J., Salomonsen J., Skjoedt K., Wong G.K.-S., Wang J., Liu B., Wang J., Yu J., Yang H., Nefedov M., Koriabine M., Dejong P.J., Goodstadt L., Webber C., Dickens N.J., Letunic I., Suyama M., Torrents D., von Mering C., Zdobnov E.M., Makova K., Nekrutenko A., Elnitski L., Eswara P., King D.C., Yang S.-P., Tyekucheva S., Radakrishnan A., Harris R.S., Chiaromonte F., Taylor J., He J., Rijnkels M., Griffiths-Jones S., Ureta-Vidal A., Hoffman M.M., Severin J., Searle S.M.J., Law A.S., Speed D., Waddington D., Cheng Z., Tuzun E., Eichler E., Bao Z., Flicek P., Shteynberg D.D., Brent M.R., Bye J.M., Huckle E.J., Chatterji S., Dewey C., Pachter L., Kouranov A., Mourelatos Z., Hatzigeorgiou A.G., Paterson A.H., Ivarie R., Brandstrom M., Axelsson E., Backstrom N., Berlin S., Webster M.T., Pourquie O., Reymond A., Ucla C., Antonarakis S.E., Long M., Emerson J.J., Betran E., Dupanloup I., Kaessmann H., Hinrichs A.S., Bejerano G., Furey T.S., Harte R.A., Raney B., Siepel A., Kent W.J., Haussler D., Eyras E., Castelo R., Abril J.F., Castellano S., Camara F., Parra G., Guigo R., Bourque G., Tesler G., Pevzner P.A., Smit A., Fulton L.A., Mardis E.R., Wilson R.K.
    Nature 2004:695-716(2004) [PubMed] [Europe PMC] [Abstract]
  2. "Sequence and gene organization of the chicken mitochondrial genome. A novel gene order in higher vertebrates."
    Desjardins P., Morais R.
    J. Mol. Biol. 1990:599-634(1990) [PubMed] [Europe PMC] [Abstract]