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Overview

Proteome nameAcidiphilium cryptum - Reference proteome
Proteins3,521
Proteome IDiUP000000245
StrainJF-5
Taxonomy349163 - Acidiphilium cryptum (strain JF-5)
Last modifiedFebruary 4, 2017
Genome assembly and annotationi GCA_000016725.1 from ENA/EMBL
Pan proteomei This proteome is part of the Acidiphilium cryptum pan proteome (fasta)

Acidiphilium cryptum (strain JF-5) is an acidophilic dissimilatory iron-reducing bacterium (DIRB) of the alpha subdivision of the Proteobacteria. This bacteria is detected in a variety of extreme low pH, radionuclide- and heavy-metal contaminated habitats where Fe(III) reduction is taking place, and may represent a significant proportion of metal-transforming organisms in these environments. Strain JF-5 serves as a model organism for facultative iron-respiring Alphaproteobacterium. It utilizes glucose as an electron donor with the concomitant reduction of soluble and solid-phase Fe(III). Major findings for this bacterium are a novel outer-membrane cytochrome c involved in iron respiration and a Cr(VI) reductase enzyme.

Componentsi

DownloadView all proteins
Component nameGenome Accession(s)
Proteins
Chromosome3053
Plasmid pACRY01160
Plasmid pACRY02169
Plasmid pACRY0377
Plasmid pACRY0432
Plasmid pACRY0528
Plasmid pACRY069
Plasmid pACRY075
Plasmid pACRY085

Publications

  1. "Complete sequence of plasmid6 pACRY06 of Acidiphilium cryptum JF-5."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M.
    , Hauser L., Kyrpides N., Kim E., Magnuson T., Richardson P.
    Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases
  2. "Complete sequence of plasmid8 pACRY08 of Acidiphilium cryptum JF-5."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M.
    , Hauser L., Kyrpides N., Kim E., Magnuson T., Richardson P.
    Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases
  3. "Complete sequence of chromosome of Acidiphilium cryptum JF-5."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M.
    , Hauser L., Kyrpides N., Kim E., Magnuson T., Richardson P.
    Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases
  4. "Complete sequence of plasmid1 pACRY01 of Acidiphilium cryptum JF-5."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M.
    , Hauser L., Kyrpides N., Kim E., Magnuson T., Richardson P.
    Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases
  5. "Complete sequence of plasmid3 pACRY03 of Acidiphilium cryptum JF-5."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M.
    , Hauser L., Kyrpides N., Kim E., Magnuson T., Richardson P.
    Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases
  6. "Complete sequence of plasmid4 pACRY04 of Acidiphilium cryptum JF-5."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M.
    , Hauser L., Kyrpides N., Kim E., Magnuson T., Richardson P.
    Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases
  7. "Complete sequence of plasmid2 pACRY02 of Acidiphilium cryptum JF-5."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M.
    , Hauser L., Kyrpides N., Kim E., Magnuson T., Richardson P.
    Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases
  8. "Complete sequence of plasmid5 pACRY05 of Acidiphilium cryptum JF-5."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M.
    , Hauser L., Kyrpides N., Kim E., Magnuson T., Richardson P.
    Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases
  9. "Complete sequence of plasmid7 pACRY07 of Acidiphilium cryptum JF-5."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Sims D., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M.
    , Hauser L., Kyrpides N., Kim E., Magnuson T., Richardson P.
    Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases