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Overview

Proteome nameRhodobacter sphaeroides ATCC 17025
Proteins4,208
Proteome IDiUP000000234
StrainATCC 17025 / ATH 2.4.3
Taxonomy349102 - Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3)
Last modifiedFebruary 4, 2017
Genome assembly and annotationi GCA_000016405.1 from ENA/EMBL
Pan proteomei This proteome is part of the Rhodobacter sphaeroides ATCC 17023 pan proteome (fasta)

Rhodobacter sphaeroides ATCC 17025 is purple nonsufur phototrophic bacterium able to grow under a wide variety of conditions. It is photosynthetic, which provides fundamental insights into light-driven, renewable-energy production and it can also detoxify metal oxides, which may be useful in bioremediation. Each of the three sequenced R.sphaeroides strains (2.4.1, ATCC 17025 and ATCC 17029) has a large ~3.0 Mb chromosome and a small ~0.9 - 1.2 Mb chromosome in addition to differing numbers of plasmids. Comparative optical mapping studies have shown that in terms of size and physical map structure, the large chromosome in these strains is relatively stable, whereas the smaller chromosomes are much more variable. Comparing these genomes will help determine what factors lead to chromosome and genome stability/instability, giving a better understanding of the mechanisms involved in genome evolution and speciation. Examining the genomes R.sphaeroides will also lead to a greater understanding of the structural and functional aspects of the light reactions of photosynthesis, mechanisms of CO2 fixation, nitrogen fixation, cytochrome diversity and electron transport systems. In addition, R. sphaeroides has been shown to be able to detoxify a number of metal oxides and oxyanions and is the subject of ongoing studies in this area. Additional investigations over many years have led to increased knowledge of tetrapyrrole and carotenoid biosynthesis, which have broad applicability (adapted from http://genome.jgi-psf.org/finished_microbes/rhos5/rhos5.home.html).

Componentsi

DownloadView all proteins
Component nameGenome Accession(s)
Proteins
Chromosome3039
Plasmid pRSPA01783
Plasmid pRSPA02267
Plasmid pRSPA03105
Plasmid pRSPA0431
Plasmid pRSPA0512

Publications

  1. "Complete sequence of plasmid pRSPA03 of Rhodobacter sphaeroides ATCC 17025."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M.
    , Hauser L., Kyrpides N., Kim E., Richardson P., Mackenzie C., Choudhary M., Donohue T.J., Kaplan S.
    Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
  2. "Complete sequence of plasmid pRSPA02 of Rhodobacter sphaeroides ATCC 17025."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M.
    , Hauser L., Kyrpides N., Kim E., Richardson P., Mackenzie C., Choudhary M., Donohue T.J., Kaplan S.
    Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
  3. "Complete sequence of plasmid pRSPA01 of Rhodobacter sphaeroides ATCC 17025."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M.
    , Hauser L., Kyrpides N., Kim E., Richardson P., Mackenzie C., Choudhary M., Donohue T.J., Kaplan S.
    Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
  4. "Complete sequence of chromosome of Rhodobacter sphaeroides ATCC 17025."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M.
    , Hauser L., Kyrpides N., Kim E., Richardson P., Mackenzie C., Choudhary M., Donohue T.J., Kaplan S.
    Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
  5. "Complete sequence of plasmid pRSPA04 of Rhodobacter sphaeroides ATCC 17025."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M.
    , Hauser L., Kyrpides N., Kim E., Richardson P., Mackenzie C., Choudhary M., Donohue T.J., Kaplan S.
    Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases
  6. "Complete sequence of plasmid pRSPA05 of Rhodobacter sphaeroides ATCC 17025."
    Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Chertkov O., Brettin T., Bruce D., Han C., Schmutz J., Larimer F., Land M.
    , Hauser L., Kyrpides N., Kim E., Richardson P., Mackenzie C., Choudhary M., Donohue T.J., Kaplan S.
    Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases