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Viral protein annotation project

Statistics

UniProt release 2016_05 - May-11, 2016 contains a total of 551,193 reviewed entries, which includes 16,629 entries from 964 species of virus.

Human immunodeficiency virus type 1 (isolate HXB2) (HIV-1)
9 entries (Viralzone: Lentivirus )

Evidence for the existence of protein Percentage of entries
at protein level 100%
at transcript level N/A
inferred from homology N/A
predicted N/A
uncertain N/A

Annotation categories Entries with Number of annotations Coverage
PubMed citations 9 215 unique 100%
Alternative products 3 6 33.3%
General annotation 9 130 100%
Function 9 27 100%
Catalytic activity 1 4 11.1%
Subcellular location 0 130 N/A
Subunit / Interacts with host 9 - 100%
Sequence annotation 9 695 100%
Amino acid modifications 9 69 100%
Mutagenesis 6 101 66.7%
Cross-references 9 917 100%
EMBL 9 15 100%
InterPro 9 39 100%
PDB 7 218 77.8%
RefSeq 7 7 77.8%

100% of reviewed HIV-1 entries are annotated with at least one keyword .

100% of reviewed HIV-1 entries are annotated with at least one GO (Gene Ontology ) term.

Influenza A virus (strain A/Puerto Rico/8/1934 H1N1)
12 entries (Viralzone: Influenzavirus A )

Evidence for the existence of protein Percentage of entries
at protein level 83.3%
at transcript level N/A
inferred from homology 16.7%
predicted N/A
uncertain N/A

Annotation categories Entries with Number of annotations Coverage
PubMed citations 12 64 unique 100%
Alternative products 6 12 50%
General annotation 12 66 100%
Function 12 14 100%
Catalytic activity 2 2 16.7%
Subcellular location 0 66 N/A
Subunit / Interacts with host 10 - 83.3%
Sequence annotation 11 347 91.7%
Amino acid modifications 4 42 33.3%
Mutagenesis 2 31 16.7%
Cross-references 12 704 100%
EMBL 12 56 100%
InterPro 12 23 100%
PDB 10 53 83.3%
RefSeq 12 12 100%

100% of reviewed Influenza A virus entries are annotated with at least one keyword .

100% of reviewed Influenza A virus entries are annotated with at least one GO (Gene Ontology ) term.

Hepatitis B virus genotype C subtype ayr (HBV-C)
0 entries (Viralzone: Orthohepadnavirus )

Evidence for the existence of protein Percentage of entries
at protein level N/A
at transcript level N/A
inferred from homology N/A
predicted N/A
uncertain N/A

Annotation categories Entries with Number of annotations Coverage
PubMed citations 0 0 unique N/A
Alternative products 0 0 N/A
General annotation 0 0 N/A
Function 0 0 N/A
Catalytic activity 0 0 N/A
Subcellular location 0 0 N/A
Subunit / Interacts with host 0 - N/A
Sequence annotation 0 0 N/A
Amino acid modifications 0 0 N/A
Mutagenesis 0 0 N/A
Cross-references 0 0 N/A
EMBL 0 0 N/A
InterPro 0 0 N/A
PDB 0 0 N/A
RefSeq 0 0 N/A

N/A of reviewed HBV-C entries are annotated with at least one keyword .

N/A of reviewed HBV-C entries are annotated with at least one GO (Gene Ontology ) term.

Hepatitis C virus genotype 1a (isolate H) (HCV)
2 entries (Viralzone: Hepacivirus )

Evidence for the existence of protein Percentage of entries
at protein level 100%
at transcript level N/A
inferred from homology N/A
predicted N/A
uncertain N/A

Annotation categories Entries with Number of annotations Coverage
PubMed citations 2 48 unique 100%
Alternative products 2 4 100%
General annotation 2 40 100%
Function 1 8 50%
Catalytic activity 1 4 50%
Subcellular location 0 40 N/A
Subunit / Interacts with host 1 - 50%
Sequence annotation 2 349 100%
Amino acid modifications 1 27 50%
Mutagenesis 1 9 50%
Cross-references 2 278 100%
EMBL 2 7 100%
InterPro 2 20 100%
PDB 1 41 50%
RefSeq 0 0 N/A

100% of reviewed HCV entries are annotated with at least one keyword .

100% of reviewed HCV entries are annotated with at least one GO (Gene Ontology ) term.

Measles virus (strain Ichinose-B95a) (MeV)
8 entries (Viralzone: Morbilivirus )

Evidence for the existence of protein Percentage of entries
at protein level 25%
at transcript level N/A
inferred from homology 75%
predicted N/A
uncertain N/A

Annotation categories Entries with Number of annotations Coverage
PubMed citations 8 8 unique 100%
Alternative products 0 0 N/A
General annotation 8 30 100%
Function 7 7 87.5%
Catalytic activity 1 3 12.5%
Subcellular location 0 30 N/A
Subunit / Interacts with host 3 - 37.5%
Sequence annotation 6 85 75%
Amino acid modifications 2 14 25%
Mutagenesis 0 0 N/A
Cross-references 8 126 100%
EMBL 8 8 100%
InterPro 8 16 100%
PDB 1 1 12.5%
RefSeq 7 7 87.5%

100% of reviewed Measles virus entries are annotated with at least one keyword .

87.5% of reviewed Measles virus entries are annotated with at least one GO (Gene Ontology ) term.

Dengue virus type 1 (strain Nauru/West Pac/1974) (DENV-1)
1 entries (Viralzone: Flavivirus )

Evidence for the existence of protein Percentage of entries
at protein level 100%
at transcript level N/A
inferred from homology N/A
predicted N/A
uncertain N/A

Annotation categories Entries with Number of annotations Coverage
PubMed citations 1 6 unique 100%
Alternative products 0 0 N/A
General annotation 1 28 100%
Function 1 11 100%
Catalytic activity 1 6 100%
Subcellular location 0 28 N/A
Subunit / Interacts with host 1 - 100%
Sequence annotation 1 194 100%
Amino acid modifications 1 13 100%
Mutagenesis 0 0 N/A
Cross-references 1 115 100%
EMBL 1 4 100%
InterPro 1 27 100%
PDB 1 7 100%
RefSeq 1 1 100%

100% of reviewed DENV-1 entries are annotated with at least one keyword .

100% of reviewed DENV-1 entries are annotated with at least one GO (Gene Ontology ) term.

Zaire ebolavirus (strain Mayinga-76) (ZEBOV)
9 entries (Viralzone: Ebolavirus )

Evidence for the existence of protein Percentage of entries
at protein level 77.8%
at transcript level N/A
inferred from homology 22.2%
predicted N/A
uncertain N/A

Annotation categories Entries with Number of annotations Coverage
PubMed citations 9 76 unique 100%
Alternative products 0 0 N/A
General annotation 9 56 100%
Function 8 12 88.9%
Catalytic activity 1 3 11.1%
Subcellular location 0 56 N/A
Subunit / Interacts with host 4 - 44.4%
Sequence annotation 9 331 100%
Amino acid modifications 3 43 33.3%
Mutagenesis 5 82 55.6%
Cross-references 9 298 100%
EMBL 9 49 100%
InterPro 9 15 100%
PDB 6 44 66.7%
RefSeq 9 9 100%

100% of reviewed Zaire ebolavirus entries are annotated with at least one keyword .

100% of reviewed Zaire ebolavirus entries are annotated with at least one GO (Gene Ontology ) term.

Human herpesvirus 1 (strain 17) (HHV-1)
73 entries (Viralzone: Simplexvirus )

Evidence for the existence of protein Percentage of entries
at protein level 79.5%
at transcript level N/A
inferred from homology 20.5%
predicted N/A
uncertain N/A

Annotation categories Entries with Number of annotations Coverage
PubMed citations 73 316 unique 100%
Alternative products 4 8 5.5%
General annotation 73 285 100%
Function 64 70 87.7%
Catalytic activity 10 11 13.7%
Subcellular location 0 285 N/A
Subunit / Interacts with host 22 - 30.1%
Sequence annotation 63 1,056 86.3%
Amino acid modifications 21 78 28.8%
Mutagenesis 11 27 15.1%
Cross-references 73 1,523 100%
EMBL 73 257 100%
InterPro 72 114 98.6%
PDB 19 66 26%
RefSeq 61 63 83.6%

100% of reviewed Human herpesvirus 1 entries are annotated with at least one keyword .

98.6% of reviewed Human herpesvirus 1 entries are annotated with at least one GO (Gene Ontology ) term.

Rotavirus A (isolate Monkey/South Africa/SA11-H96/1958) (RV-A)
12 entries (Viralzone: Rotavirus A )

Evidence for the existence of protein Percentage of entries
at protein level 50%
at transcript level N/A
inferred from homology 50%
predicted N/A
uncertain N/A

Annotation categories Entries with Number of annotations Coverage
PubMed citations 12 15 unique 100%
Alternative products 1 2 8.3%
General annotation 12 61 100%
Function 11 14 91.7%
Catalytic activity 2 3 16.7%
Subcellular location 0 61 N/A
Subunit / Interacts with host 5 - 41.7%
Sequence annotation 11 89 91.7%
Amino acid modifications 4 17 33.3%
Mutagenesis 2 11 16.7%
Cross-references 12 172 100%
EMBL 12 12 100%
InterPro 12 19 100%
PDB 1 1 8.3%
RefSeq 12 12 100%

100% of reviewed Rotavirus A entries are annotated with at least one keyword .

100% of reviewed Rotavirus A entries are annotated with at least one GO (Gene Ontology ) term.

Human papillomavirus type 32
6 entries (Viralzone: Alphapapillomavirus )

Evidence for the existence of protein Percentage of entries
at protein level N/A
at transcript level N/A
inferred from homology 100%
predicted N/A
uncertain N/A

Annotation categories Entries with Number of annotations Coverage
PubMed citations 6 0 unique 100%
Alternative products 0 0 N/A
General annotation 6 24 100%
Function 6 6 100%
Catalytic activity 1 1 16.7%
Subcellular location 0 24 N/A
Subunit / Interacts with host 4 - 66.7%
Sequence annotation 6 22 100%
Amino acid modifications 3 7 50%
Mutagenesis 0 0 N/A
Cross-references 6 118 100%
EMBL 6 7 100%
InterPro 6 13 100%
PDB 0 0 N/A
RefSeq 6 6 100%

100% of reviewed HPV32 entries are annotated with at least one keyword .

100% of reviewed HPV32 entries are annotated with at least one GO (Gene Ontology ) term.

Human SARS coronavirus (SARS-CoV)
15 entries (Viralzone: Betacoronavirus )

Evidence for the existence of protein Percentage of entries
at protein level 66.7%
at transcript level N/A
inferred from homology 13.3%
predicted 20%
uncertain N/A

Annotation categories Entries with Number of annotations Coverage
PubMed citations 15 107 unique 100%
Alternative products 2 4 13.3%
General annotation 12 94 80%
Function 11 31 73.3%
Catalytic activity 2 6 13.3%
Subcellular location 0 94 N/A
Subunit / Interacts with host 7 - 46.7%
Sequence annotation 14 955 93.3%
Amino acid modifications 4 32 26.7%
Mutagenesis 4 28 26.7%
Cross-references 15 1,166 100%
EMBL 15 369 100%
InterPro 14 53 93.3%
PDB 8 237 53.3%
RefSeq 12 12 80%

100% of reviewed SARS entries are annotated with at least one keyword .

86.7% of reviewed SARS entries are annotated with at least one GO (Gene Ontology ) term.

Variola virus (isolate Human/India/Ind3/1967) (VARV)
159 entries (Viralzone: Orthopoxvirus )

Evidence for the existence of protein Percentage of entries
at protein level 2.5%
at transcript level 28.9%
inferred from homology 68.6%
predicted N/A
uncertain N/A

Annotation categories Entries with Number of annotations Coverage
PubMed citations 159 22 unique 100%
Alternative products 0 0 N/A
General annotation 159 529 100%
Function 124 126 78%
Catalytic activity 27 31 17%
Subcellular location 0 529 N/A
Subunit / Interacts with host 20 - 12.6%
Sequence annotation 101 517 63.5%
Amino acid modifications 27 75 17%
Mutagenesis 1 1 0.6%
Cross-references 159 2,569 100%
EMBL 159 464 100%
InterPro 155 303 97.5%
PDB 2 4 1.3%
RefSeq 157 157 98.7%

100% of reviewed Variola virus entries are annotated with at least one keyword .

79.9% of reviewed Variola virus entries are annotated with at least one GO (Gene Ontology ) term.