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  1. ProgramViral protein annotation program

    Statistics

    UniProt release 2014_09 - Oct-01, 2014 contains a total of 546,439 reviewed entries, which includes 16,479 entries from 947 species of virus.

    Human immunodeficiency virus type 1 (isolate HXB2) (HIV-1)
    9 entries (Viralzone: Lentivirus)

    Evidence for the existence of protein Percentage of entries
    at protein level 88.9%
    at transcript level N/A
    inferred from homology 11.1%
    predicted N/A
    uncertain N/A

    Annotation categories Entries with Number of annotations Coverage
    PubMed citations 9 131 unique 100%
    Alternative products 3 6 33.3%
    General annotation 9 183 100%
    Function 9 30 100%
    Catalytic activity 1 4 11.1%
    Subcellular location 9 183 100%
    Subunit / Interacts with host 9 - 100%
    Sequence annotation 9 631 100%
    Amino acid modifications 8 64 88.9%
    Mutagenesis 6 71 66.7%
    Cross-references 9 822 100%
    EMBL 9 15 100%
    InterPro 9 39 100%
    PDB 5 186 55.6%
    RefSeq 7 7 77.8%

    100% of reviewed HIV-1 entries are annotated with at least one keyword.

    100% of reviewed HIV-1 entries are annotated with at least one GO (Gene Ontology) term.

    Influenza A virus (strain A/Puerto Rico/8/1934 H1N1)
    12 entries (Viralzone: Influenzavirus A)

    Evidence for the existence of protein Percentage of entries
    at protein level 75%
    at transcript level N/A
    inferred from homology 25%
    predicted N/A
    uncertain N/A

    Annotation categories Entries with Number of annotations Coverage
    PubMed citations 12 44 unique 100%
    Alternative products 6 12 50%
    General annotation 12 93 100%
    Function 12 14 100%
    Catalytic activity 2 2 16.7%
    Subcellular location 10 93 83.3%
    Subunit / Interacts with host 10 - 83.3%
    Sequence annotation 11 325 91.7%
    Amino acid modifications 4 42 33.3%
    Mutagenesis 2 31 16.7%
    Cross-references 12 646 100%
    EMBL 12 56 100%
    InterPro 12 23 100%
    PDB 9 39 75%
    RefSeq 12 12 100%

    100% of reviewed Influenza A virus entries are annotated with at least one keyword.

    100% of reviewed Influenza A virus entries are annotated with at least one GO (Gene Ontology) term.

    Hepatitis B virus genotype C subtype ayr (HBV-C)
    0 entries (Viralzone: Orthohepadnavirus)

    Evidence for the existence of protein Percentage of entries
    at protein level N/A
    at transcript level N/A
    inferred from homology N/A
    predicted N/A
    uncertain N/A

    Annotation categories Entries with Number of annotations Coverage
    PubMed citations 0 0 unique N/A
    Alternative products 0 0 N/A
    General annotation 0 0 N/A
    Function 0 0 N/A
    Catalytic activity 0 0 N/A
    Subcellular location 0 0 N/A
    Subunit / Interacts with host 0 - N/A
    Sequence annotation 0 0 N/A
    Amino acid modifications 0 0 N/A
    Mutagenesis 0 0 N/A
    Cross-references 0 0 N/A
    EMBL 0 0 N/A
    InterPro 0 0 N/A
    PDB 0 0 N/A
    RefSeq 0 0 N/A

    N/A of reviewed HBV-C entries are annotated with at least one keyword.

    N/A of reviewed HBV-C entries are annotated with at least one GO (Gene Ontology) term.

    Hepatitis C virus genotype 1a (isolate H) (HCV)
    2 entries (Viralzone: Hepacivirus)

    Evidence for the existence of protein Percentage of entries
    at protein level 100%
    at transcript level N/A
    inferred from homology N/A
    predicted N/A
    uncertain N/A

    Annotation categories Entries with Number of annotations Coverage
    PubMed citations 2 48 unique 100%
    Alternative products 2 4 100%
    General annotation 2 78 100%
    Function 1 8 50%
    Catalytic activity 1 4 50%
    Subcellular location 2 78 100%
    Subunit / Interacts with host 1 - 50%
    Sequence annotation 2 348 100%
    Amino acid modifications 1 27 50%
    Mutagenesis 1 9 50%
    Cross-references 2 187 100%
    EMBL 2 7 100%
    InterPro 2 20 100%
    PDB 1 35 50%
    RefSeq 0 0 N/A

    100% of reviewed HCV entries are annotated with at least one keyword.

    100% of reviewed HCV entries are annotated with at least one GO (Gene Ontology) term.

    Measles virus (strain Ichinose-B95a) (MeV)
    8 entries (Viralzone: Morbilivirus)

    Evidence for the existence of protein Percentage of entries
    at protein level 25%
    at transcript level N/A
    inferred from homology 75%
    predicted N/A
    uncertain N/A

    Annotation categories Entries with Number of annotations Coverage
    PubMed citations 8 8 unique 100%
    Alternative products 0 0 N/A
    General annotation 8 43 100%
    Function 7 7 87.5%
    Catalytic activity 1 2 12.5%
    Subcellular location 6 43 75%
    Subunit / Interacts with host 3 - 37.5%
    Sequence annotation 6 85 75%
    Amino acid modifications 2 14 25%
    Mutagenesis 0 0 N/A
    Cross-references 8 115 100%
    EMBL 8 8 100%
    InterPro 8 16 100%
    PDB 1 1 12.5%
    RefSeq 7 7 87.5%

    100% of reviewed Measles virus entries are annotated with at least one keyword.

    87.5% of reviewed Measles virus entries are annotated with at least one GO (Gene Ontology) term.

    Dengue virus type 1 (strain Nauru/West Pac/1974) (DENV-1)
    1 entries (Viralzone: Flavivirus)

    Evidence for the existence of protein Percentage of entries
    at protein level 100%
    at transcript level N/A
    inferred from homology N/A
    predicted N/A
    uncertain N/A

    Annotation categories Entries with Number of annotations Coverage
    PubMed citations 1 6 unique 100%
    Alternative products 0 0 N/A
    General annotation 1 60 100%
    Function 1 11 100%
    Catalytic activity 1 6 100%
    Subcellular location 1 60 100%
    Subunit / Interacts with host 1 - 100%
    Sequence annotation 1 194 100%
    Amino acid modifications 1 13 100%
    Mutagenesis 0 0 N/A
    Cross-references 1 112 100%
    EMBL 1 4 100%
    InterPro 1 27 100%
    PDB 1 6 100%
    RefSeq 1 1 100%

    100% of reviewed DENV-1 entries are annotated with at least one keyword.

    100% of reviewed DENV-1 entries are annotated with at least one GO (Gene Ontology) term.

    Zaire ebolavirus (strain Mayinga-76) (ZEBOV)
    9 entries (Viralzone: Ebolavirus)

    Evidence for the existence of protein Percentage of entries
    at protein level 77.8%
    at transcript level N/A
    inferred from homology 22.2%
    predicted N/A
    uncertain N/A

    Annotation categories Entries with Number of annotations Coverage
    PubMed citations 9 73 unique 100%
    Alternative products 0 0 N/A
    General annotation 9 92 100%
    Function 8 12 88.9%
    Catalytic activity 1 2 11.1%
    Subcellular location 9 92 100%
    Subunit / Interacts with host 4 - 44.4%
    Sequence annotation 9 273 100%
    Amino acid modifications 3 43 33.3%
    Mutagenesis 5 82 55.6%
    Cross-references 9 251 100%
    EMBL 9 49 100%
    InterPro 9 14 100%
    PDB 4 29 44.4%
    RefSeq 9 9 100%

    100% of reviewed Zaire ebolavirus entries are annotated with at least one keyword.

    100% of reviewed Zaire ebolavirus entries are annotated with at least one GO (Gene Ontology) term.

    Human herpesvirus 1 (strain 17) (HHV-1)
    73 entries (Viralzone: Simplexvirus)

    Evidence for the existence of protein Percentage of entries
    at protein level 78.1%
    at transcript level N/A
    inferred from homology 21.9%
    predicted N/A
    uncertain N/A

    Annotation categories Entries with Number of annotations Coverage
    PubMed citations 73 260 unique 100%
    Alternative products 4 8 5.5%
    General annotation 73 481 100%
    Function 64 70 87.7%
    Catalytic activity 10 11 13.7%
    Subcellular location 68 481 93.2%
    Subunit / Interacts with host 20 - 27.4%
    Sequence annotation 62 935 84.9%
    Amino acid modifications 20 76 27.4%
    Mutagenesis 9 23 12.3%
    Cross-references 73 1,385 100%
    EMBL 73 257 100%
    InterPro 72 109 98.6%
    PDB 12 49 16.4%
    RefSeq 73 77 100%

    100% of reviewed Human herpesvirus 1 entries are annotated with at least one keyword.

    98.6% of reviewed Human herpesvirus 1 entries are annotated with at least one GO (Gene Ontology) term.

    Rotavirus A (isolate Monkey/South Africa/SA11-H96/1958) (RV-A)
    12 entries (Viralzone: Rotavirus A)

    Evidence for the existence of protein Percentage of entries
    at protein level 41.7%
    at transcript level N/A
    inferred from homology 58.3%
    predicted N/A
    uncertain N/A

    Annotation categories Entries with Number of annotations Coverage
    PubMed citations 12 15 unique 100%
    Alternative products 1 2 8.3%
    General annotation 12 83 100%
    Function 11 14 91.7%
    Catalytic activity 2 3 16.7%
    Subcellular location 11 83 91.7%
    Subunit / Interacts with host 5 - 41.7%
    Sequence annotation 11 75 91.7%
    Amino acid modifications 4 17 33.3%
    Mutagenesis 2 11 16.7%
    Cross-references 12 155 100%
    EMBL 12 12 100%
    InterPro 12 20 100%
    PDB 0 0 N/A
    RefSeq 12 12 100%

    100% of reviewed Rotavirus A entries are annotated with at least one keyword.

    100% of reviewed Rotavirus A entries are annotated with at least one GO (Gene Ontology) term.

    Human papillomavirus type 32
    6 entries (Viralzone: Alphapapillomavirus)

    Evidence for the existence of protein Percentage of entries
    at protein level N/A
    at transcript level N/A
    inferred from homology 100%
    predicted N/A
    uncertain N/A

    Annotation categories Entries with Number of annotations Coverage
    PubMed citations 6 0 unique 100%
    Alternative products 0 0 N/A
    General annotation 6 25 100%
    Function 6 6 100%
    Catalytic activity 1 1 16.7%
    Subcellular location 5 25 83.3%
    Subunit / Interacts with host 4 - 66.7%
    Sequence annotation 4 9 66.7%
    Amino acid modifications 1 1 16.7%
    Mutagenesis 0 0 N/A
    Cross-references 6 106 100%
    EMBL 6 7 100%
    InterPro 6 14 100%
    PDB 0 0 N/A
    RefSeq 6 6 100%

    100% of reviewed HPV32 entries are annotated with at least one keyword.

    100% of reviewed HPV32 entries are annotated with at least one GO (Gene Ontology) term.

    Human SARS coronavirus (SARS-CoV)
    15 entries (Viralzone: Betacoronavirus)

    Evidence for the existence of protein Percentage of entries
    at protein level 60%
    at transcript level N/A
    inferred from homology 13.3%
    predicted 26.7%
    uncertain N/A

    Annotation categories Entries with Number of annotations Coverage
    PubMed citations 15 78 unique 100%
    Alternative products 2 4 13.3%
    General annotation 13 150 86.7%
    Function 11 24 73.3%
    Catalytic activity 2 6 13.3%
    Subcellular location 13 150 86.7%
    Subunit / Interacts with host 6 - 40%
    Sequence annotation 14 888 93.3%
    Amino acid modifications 3 31 20%
    Mutagenesis 3 26 20%
    Cross-references 15 1,093 100%
    EMBL 15 369 100%
    InterPro 14 49 93.3%
    PDB 8 225 53.3%
    RefSeq 12 12 80%

    100% of reviewed SARS entries are annotated with at least one keyword.

    86.7% of reviewed SARS entries are annotated with at least one GO (Gene Ontology) term.

    Variola virus (isolate Human/India/Ind3/1967) (VARV)
    159 entries (Viralzone: Orthopoxvirus)

    Evidence for the existence of protein Percentage of entries
    at protein level 2.5%
    at transcript level 28.9%
    inferred from homology 68.6%
    predicted N/A
    uncertain N/A

    Annotation categories Entries with Number of annotations Coverage
    PubMed citations 159 22 unique 100%
    Alternative products 0 0 N/A
    General annotation 159 695 100%
    Function 124 126 78%
    Catalytic activity 27 31 17%
    Subcellular location 98 695 61.6%
    Subunit / Interacts with host 20 - 12.6%
    Sequence annotation 101 513 63.5%
    Amino acid modifications 27 75 17%
    Mutagenesis 1 1 0.6%
    Cross-references 159 2,378 100%
    EMBL 159 464 100%
    InterPro 155 301 97.5%
    PDB 2 4 1.3%
    RefSeq 157 157 98.7%

    100% of reviewed Variola virus entries are annotated with at least one keyword.

    79.9% of reviewed Variola virus entries are annotated with at least one GO (Gene Ontology) term.