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ProgramViral protein annotation program

Statistics

UniProt release 2014_07 - Jul-09, 2014 contains a total of 546,000 reviewed entries, which includes 16,479 entries from 951 species of virus.

Human immunodeficiency virus type 1 (isolate HXB2) (HIV-1)
9 entries (Viralzone: Lentivirus)

Evidence for the existence of protein Percentage of entries
at protein level 88.9%
at transcript level N/A
inferred from homology 11.1%
predicted N/A
uncertain N/A

Annotation categories Entries with Number of annotations Coverage
PubMed citations 9 131 unique 100%
Alternative products 3 6 33.3%
General annotation 9 183 100%
Function 9 30 100%
Catalytic activity 1 4 11.1%
Subcellular location 9 183 100%
Subunit / Interacts with host 9 - 100%
Sequence annotation 9 631 100%
Amino acid modifications 8 64 88.9%
Mutagenesis 6 71 66.7%
Cross-references 9 562 100%
EMBL 9 15 100%
InterPro 9 39 100%
PDB 5 186 55.6%
RefSeq 7 7 77.8%

100% of reviewed HIV-1 entries are annotated with at least one keyword.

100% of reviewed HIV-1 entries are annotated with at least one GO (Gene Ontology) term.

Influenza A virus (strain A/Puerto Rico/8/1934 H1N1)
12 entries (Viralzone: Influenzavirus A)

Evidence for the existence of protein Percentage of entries
at protein level 75%
at transcript level N/A
inferred from homology 25%
predicted N/A
uncertain N/A

Annotation categories Entries with Number of annotations Coverage
PubMed citations 12 44 unique 100%
Alternative products 6 12 50%
General annotation 12 93 100%
Function 12 14 100%
Catalytic activity 2 2 16.7%
Subcellular location 10 93 83.3%
Subunit / Interacts with host 10 - 83.3%
Sequence annotation 11 324 91.7%
Amino acid modifications 4 42 33.3%
Mutagenesis 2 31 16.7%
Cross-references 12 284 100%
EMBL 12 56 100%
InterPro 12 23 100%
PDB 9 39 75%
RefSeq 12 12 100%

100% of reviewed Influenza A virus entries are annotated with at least one keyword.

100% of reviewed Influenza A virus entries are annotated with at least one GO (Gene Ontology) term.

Hepatitis B virus genotype C subtype ayr (HBV-C)
0 entries (Viralzone: Orthohepadnavirus)

Evidence for the existence of protein Percentage of entries
at protein level N/A
at transcript level N/A
inferred from homology N/A
predicted N/A
uncertain N/A

Annotation categories Entries with Number of annotations Coverage
PubMed citations 0 0 unique N/A
Alternative products 0 0 N/A
General annotation 0 0 N/A
Function 0 0 N/A
Catalytic activity 0 0 N/A
Subcellular location 0 0 N/A
Subunit / Interacts with host 0 - N/A
Sequence annotation 0 0 N/A
Amino acid modifications 0 0 N/A
Mutagenesis 0 0 N/A
Cross-references 0 0 N/A
EMBL 0 0 N/A
InterPro 0 0 N/A
PDB 0 0 N/A
RefSeq 0 0 N/A

N/A of reviewed HBV-C entries are annotated with at least one keyword.

N/A of reviewed HBV-C entries are annotated with at least one GO (Gene Ontology) term.

Hepatitis C virus genotype 1a (isolate H) (HCV)
2 entries (Viralzone: Hepacivirus)

Evidence for the existence of protein Percentage of entries
at protein level 100%
at transcript level N/A
inferred from homology N/A
predicted N/A
uncertain N/A

Annotation categories Entries with Number of annotations Coverage
PubMed citations 2 48 unique 100%
Alternative products 2 4 100%
General annotation 2 78 100%
Function 1 8 50%
Catalytic activity 1 4 50%
Subcellular location 2 78 100%
Subunit / Interacts with host 1 - 50%
Sequence annotation 2 348 100%
Amino acid modifications 1 27 50%
Mutagenesis 1 9 50%
Cross-references 2 135 100%
EMBL 2 7 100%
InterPro 2 20 100%
PDB 1 35 50%
RefSeq 0 0 N/A

100% of reviewed HCV entries are annotated with at least one keyword.

100% of reviewed HCV entries are annotated with at least one GO (Gene Ontology) term.

Measles virus (strain Ichinose-B95a) (MeV)
8 entries (Viralzone: Morbilivirus)

Evidence for the existence of protein Percentage of entries
at protein level 25%
at transcript level N/A
inferred from homology 75%
predicted N/A
uncertain N/A

Annotation categories Entries with Number of annotations Coverage
PubMed citations 8 8 unique 100%
Alternative products 0 0 N/A
General annotation 8 43 100%
Function 7 7 87.5%
Catalytic activity 1 2 12.5%
Subcellular location 6 43 75%
Subunit / Interacts with host 3 - 37.5%
Sequence annotation 6 85 75%
Amino acid modifications 2 14 25%
Mutagenesis 0 0 N/A
Cross-references 8 76 100%
EMBL 8 8 100%
InterPro 8 16 100%
PDB 1 1 12.5%
RefSeq 7 7 87.5%

100% of reviewed Measles virus entries are annotated with at least one keyword.

87.5% of reviewed Measles virus entries are annotated with at least one GO (Gene Ontology) term.

Dengue virus type 1 (strain Nauru/West Pac/1974) (DENV-1)
1 entries (Viralzone: Flavivirus)

Evidence for the existence of protein Percentage of entries
at protein level 100%
at transcript level N/A
inferred from homology N/A
predicted N/A
uncertain N/A

Annotation categories Entries with Number of annotations Coverage
PubMed citations 1 6 unique 100%
Alternative products 0 0 N/A
General annotation 1 60 100%
Function 1 11 100%
Catalytic activity 1 6 100%
Subcellular location 1 60 100%
Subunit / Interacts with host 1 - 100%
Sequence annotation 1 194 100%
Amino acid modifications 1 13 100%
Mutagenesis 0 0 N/A
Cross-references 1 85 100%
EMBL 1 4 100%
InterPro 1 27 100%
PDB 1 6 100%
RefSeq 1 1 100%

100% of reviewed DENV-1 entries are annotated with at least one keyword.

100% of reviewed DENV-1 entries are annotated with at least one GO (Gene Ontology) term.

Zaire ebolavirus (strain Mayinga-76) (ZEBOV)
9 entries (Viralzone: Ebolavirus)

Evidence for the existence of protein Percentage of entries
at protein level 77.8%
at transcript level 11.1%
inferred from homology 11.1%
predicted N/A
uncertain N/A

Annotation categories Entries with Number of annotations Coverage
PubMed citations 9 73 unique 100%
Alternative products 0 0 N/A
General annotation 9 92 100%
Function 8 12 88.9%
Catalytic activity 1 2 11.1%
Subcellular location 9 92 100%
Subunit / Interacts with host 4 - 44.4%
Sequence annotation 9 273 100%
Amino acid modifications 3 43 33.3%
Mutagenesis 5 82 55.6%
Cross-references 9 182 100%
EMBL 9 49 100%
InterPro 9 14 100%
PDB 4 29 44.4%
RefSeq 9 9 100%

100% of reviewed Zaire ebolavirus entries are annotated with at least one keyword.

100% of reviewed Zaire ebolavirus entries are annotated with at least one GO (Gene Ontology) term.

Human herpesvirus 1 (strain 17) (HHV-1)
73 entries (Viralzone: Simplexvirus)

Evidence for the existence of protein Percentage of entries
at protein level 76.7%
at transcript level N/A
inferred from homology 23.3%
predicted N/A
uncertain N/A

Annotation categories Entries with Number of annotations Coverage
PubMed citations 73 260 unique 100%
Alternative products 4 8 5.5%
General annotation 73 481 100%
Function 64 70 87.7%
Catalytic activity 10 11 13.7%
Subcellular location 68 481 93.2%
Subunit / Interacts with host 20 - 27.4%
Sequence annotation 62 935 84.9%
Amino acid modifications 20 76 27.4%
Mutagenesis 9 23 12.3%
Cross-references 73 1,029 100%
EMBL 73 257 100%
InterPro 72 109 98.6%
PDB 12 49 16.4%
RefSeq 73 77 100%

100% of reviewed Human herpesvirus 1 entries are annotated with at least one keyword.

98.6% of reviewed Human herpesvirus 1 entries are annotated with at least one GO (Gene Ontology) term.

Rotavirus A (isolate Monkey/South Africa/SA11-H96/1958) (RV-A)
12 entries (Viralzone: Rotavirus A)

Evidence for the existence of protein Percentage of entries
at protein level 41.7%
at transcript level N/A
inferred from homology 58.3%
predicted N/A
uncertain N/A

Annotation categories Entries with Number of annotations Coverage
PubMed citations 12 15 unique 100%
Alternative products 1 2 8.3%
General annotation 12 83 100%
Function 11 14 91.7%
Catalytic activity 2 3 16.7%
Subcellular location 11 83 91.7%
Subunit / Interacts with host 5 - 41.7%
Sequence annotation 11 75 91.7%
Amino acid modifications 4 17 33.3%
Mutagenesis 2 11 16.7%
Cross-references 12 98 100%
EMBL 12 12 100%
InterPro 12 20 100%
PDB 0 0 N/A
RefSeq 12 12 100%

100% of reviewed Rotavirus A entries are annotated with at least one keyword.

100% of reviewed Rotavirus A entries are annotated with at least one GO (Gene Ontology) term.

Human papillomavirus type 32
6 entries (Viralzone: Alphapapillomavirus)

Evidence for the existence of protein Percentage of entries
at protein level N/A
at transcript level N/A
inferred from homology 100%
predicted N/A
uncertain N/A

Annotation categories Entries with Number of annotations Coverage
PubMed citations 6 0 unique 100%
Alternative products 0 0 N/A
General annotation 6 25 100%
Function 6 6 100%
Catalytic activity 1 1 16.7%
Subcellular location 5 25 83.3%
Subunit / Interacts with host 4 - 66.7%
Sequence annotation 4 9 66.7%
Amino acid modifications 1 1 16.7%
Mutagenesis 0 0 N/A
Cross-references 6 69 100%
EMBL 6 7 100%
InterPro 6 14 100%
PDB 0 0 N/A
RefSeq 6 6 100%

100% of reviewed HPV32 entries are annotated with at least one keyword.

100% of reviewed HPV32 entries are annotated with at least one GO (Gene Ontology) term.

Human SARS coronavirus (SARS-CoV)
15 entries (Viralzone: Betacoronavirus)

Evidence for the existence of protein Percentage of entries
at protein level 60%
at transcript level N/A
inferred from homology 6.7%
predicted 33.3%
uncertain N/A

Annotation categories Entries with Number of annotations Coverage
PubMed citations 15 78 unique 100%
Alternative products 2 4 13.3%
General annotation 13 150 86.7%
Function 11 24 73.3%
Catalytic activity 2 6 13.3%
Subcellular location 13 150 86.7%
Subunit / Interacts with host 6 - 40%
Sequence annotation 14 890 93.3%
Amino acid modifications 4 33 26.7%
Mutagenesis 3 26 20%
Cross-references 15 991 100%
EMBL 15 369 100%
InterPro 14 49 93.3%
PDB 8 225 53.3%
RefSeq 12 12 80%

100% of reviewed SARS entries are annotated with at least one keyword.

86.7% of reviewed SARS entries are annotated with at least one GO (Gene Ontology) term.

Variola virus (isolate Human/India/Ind3/1967) (VARV)
159 entries (Viralzone: Orthopoxvirus)

Evidence for the existence of protein Percentage of entries
at protein level 2.5%
at transcript level 28.9%
inferred from homology 66%
predicted 2.5%
uncertain N/A

Annotation categories Entries with Number of annotations Coverage
PubMed citations 159 22 unique 100%
Alternative products 0 0 N/A
General annotation 159 695 100%
Function 124 126 78%
Catalytic activity 27 31 17%
Subcellular location 98 695 61.6%
Subunit / Interacts with host 20 - 12.6%
Sequence annotation 101 513 63.5%
Amino acid modifications 27 75 17%
Mutagenesis 1 1 0.6%
Cross-references 159 1,968 100%
EMBL 159 464 100%
InterPro 155 301 97.5%
PDB 2 4 1.3%
RefSeq 157 157 98.7%

100% of reviewed Variola virus entries are annotated with at least one keyword.

79.9% of reviewed Variola virus entries are annotated with at least one GO (Gene Ontology) term.